Scaffold Ga0208011

Basic Information
Taxon OID	3300025096 Open in IMG/M
Scaffold ID	Ga0208011_1000081 Open in IMG/M
Source Dataset Name	Marine viral communities from the Subarctic Pacific Ocean - 7_ETSP_OMZ_AT15161 metaG (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300025096 Open in IMG/M

Scaffold ID

Ga0208011_1000081 Open in IMG/M

Source Dataset Name

Marine viral communities from the Subarctic Pacific Ocean - 7_ETSP_OMZ_AT15161 metaG (SPAdes)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	45438
Total Scaffold Genes	56 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	8 (14.29%)
Novel Protein Genes	5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	5

Scaffold Components

Scaffold Length (bps)

45438

Total Scaffold Genes

56 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

8 (14.29%)

Novel Protein Genes

5 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

0 (0.00%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location Name	Pacific Ocean
Coordinates	Lat. (^o)	-11.499	Long. (^o)	-81.405	Alt. (m)	Depth (m)	120
Location on Map

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Source Dataset Sampling Location

Location Name

Pacific Ocean

Coordinates

Lat. (^o)

-11.499

Long. (^o)

-81.405

Alt. (m)

Depth (m)

120

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F025852	Metagenome / Metatranscriptome	200	Y
F028316	Metagenome / Metatranscriptome	192	Y
F033590	Metagenome / Metatranscriptome	177	Y
F035326	Metagenome / Metatranscriptome	172	Y
F072246	Metagenome / Metatranscriptome	121	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208011_100008114	F072246	N/A	MTNNSTENTPVTSDYSRLARWLCLFEAVNIIAEKAEKIEHTTDCLKPIPINKYINERYHSVLKDVEYELSNNHHTHRR
Ga0208011_100008117	F033590	N/A	MGKFENKFLSLLKEDDIAGTAPPPPPAVAAEPEDDQQSFANALDEPGNAVDFEDVIDQNPNEQEELSDLQEWIGNIDEVLQYLNGGVSSVLGKLRDDNKVGTIFADVSDATKSEILDVCERFASLNQIFKNLYIEKHK
Ga0208011_100008124	F028316	N/A	MKKTIPKSKNFDNLLKSSINAVEPAEIEEQDMSFITDYLGEHLKSFILLGYDLKGESVVMVSGKTPQDYDAIETLLRRVAGVDFFRDVQEQTNTNE
Ga0208011_100008125	F035326	N/A	MKNKVTTCGYFIKRLRDNGYTVNRIFSEYTTEDPRRWTVMLNPQTNALYITCYVNYDWTEDFKFELNDGSRFKNFQLKTDSMEVIMTKLIEKDIMPNEKDNS
Ga0208011_100008138	F025852	N/A	MDIITYIDSIGRTCFGELVEQTDSILRVKSPAMIMVTPNDASNMKVDVMPLFFTEFSSGEAPVFKYAISQYTEVEVTISDKILVHYNAKINTTEESSPETPVEPLSEKDVPEVTLFEDN

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0208011_1000081

Overview

Ecosystem & Geography

Associated Families

Sequences