Scaffold Ga0208011_1000053

Overview

Basic Information

• Taxon OID: 3300025096
• Scaffold ID: Ga0208011_1000053
• Source Dataset Name: Marine viral communities from the Subarctic Pacific Ocean - 7_ETSP_OMZ_AT15161 metaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 55033
• Total Scaffold Genes: 73
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 67 (91.78%)
• Novel Protein Genes: 13
• Novel Protein Genes with Ribosome Binding Sites (RBS): 11 (84.62%)
• Associated Families: 13

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): -11.499
  • Long. (^o): -81.405
  • Depth (m): 120

Associated Families

Family	Category	Number of Sequences	3D Structure?
F012033	Metagenome	284	Y
F014627	Metagenome	261	Y
F015478	Metagenome / Metatranscriptome	254	Y
F015480	Metagenome	254	Y
F016410	Metagenome / Metatranscriptome	247	Y
F016673	Metagenome	245	Y
F020018	Metagenome	226	Y
F021117	Metagenome	220	Y
F025517	Metagenome / Metatranscriptome	201	Y
F049685	Metagenome	146	Y
F082537	Metagenome	113	Y
F092858	Metagenome	107	N
F097137	Metagenome	104	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208011_100005316	F025517	GGA	MYGINAKLPKCLFKCFLCRITKMQNIYIWGNFAIPPEHPYQEQRICKKCAIKEHGKKNKRKLNEIIDERTKQWLEKQKR
Ga0208011_100005321	F020018	GGAG	MKMIQITKWLDPNDETWFKGVYITTGEWLMIEKQRLSKLTKKRVVISTDSSGAKAIFRERIK
Ga0208011_100005327	F016673	N/A	MVSESSLEDIVIKSYLELYLRSLNESRSHKFITIIKNRMLELIKRKQLRNQNQ
Ga0208011_100005330	F016410	N/A	MRKFSSRKEQLEWADKLLRKLSDKNTGGVTPIIKSMITDNYIRRLKK
Ga0208011_100005333	F014627	GAG	MGKMKEKLIEDMMMHPDFYIEMEDYDFWIQCRKEEILEREGKPAIKLIRKGKYVKRRNKEKSSKI
Ga0208011_100005337	F012033	AGGAG	MEKKLYYHKEHHLSGKIHFKYVGNITEDGAMILQQKTGYHPAGYGFYGFACINNVARWWCANSCD
Ga0208011_100005338	F015480	AGGAG	VNLPTLENMHVSERTENIYAQIIAEEDIRRSYGEEIILPQRTSFIRENTF
Ga0208011_100005342	F097137	AGGA	MKKITIIATMLLFVCCSEAEATNNTTNEVIKPVVRKVYTHPVEINLDDMTFTNAFRVQYLAKGEGSTFWWRNNEYTTNLAQITVKPDEFVVKHTELDVETVGWVRNNDDPNDECRSNVLDDCGVCNGPGKVTWFRDKDGDGLGTFMEWITSCTFPTDMEIEKYQHESLLEGGGDQGH
Ga0208011_100005343	F082537	AGGAG	MKNKSSFLNNCYEWLFSEEERRPLAYIVSFFMMILISTAVCLFIIAIDRHVGGIVLWMFN
Ga0208011_100005353	F049685	GGAGG	MSKNVKDIMAEMLAEWLFKDFGILIDEPSENEIAETLEEHDRRMHANDGVKKR
Ga0208011_100005354	F021117	AGGAG	MRMMGLKRDEMFQATRWLNLMVGLFNFYLYTYGGGYHLLGIGMINIAVWSFSRGVHK
Ga0208011_100005361	F092858	AGG	MPTRRAIFSSYIIPKESASLEEGVTKWSIDGDATISGTLGGKGIATLTGSQWGEAWSSFQHPEQYWEDYGSNWDDAGETYNNVGITISGAYSLNTDSDVNSTALVFLYLKNLGSSSTQGLKLSLDGSNYNIYIPPQGSIHLRGDGSTLQLQHAKVNKVTDNTTIEYILAK
Ga0208011_100005367	F015478	AGGA	MRPSLFDQLYYNIDLGTSQKAEAPTQPALTPAQRTPTTDEAGLGTKPTADPKEFTGMKFTHSLIKHLDQLYSKMLAGEVKEIASEPENDPKQKIIEGQTGALVLNEKEAFFNPGNSSVTESM