NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208011_1000047

Scaffold Ga0208011_1000047


Overview

Basic Information
Taxon OID3300025096 Open in IMG/M
Scaffold IDGa0208011_1000047 Open in IMG/M
Source Dataset NameMarine viral communities from the Subarctic Pacific Ocean - 7_ETSP_OMZ_AT15161 metaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)58581
Total Scaffold Genes62 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)52 (83.87%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (66.67%)
Associated Families6

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)-11.499Long. (o)-81.405Alt. (m)Depth (m)120
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003975Metagenome459Y
F009560Metagenome / Metatranscriptome316Y
F010790Metagenome299N
F013943Metagenome267Y
F018015Metagenome / Metatranscriptome237Y
F057673Metagenome / Metatranscriptome136Y

Sequences

Protein IDFamilyRBSSequence
Ga0208011_100004722F003975AGGAGMIKLKELLKEWNDTSFRDLPKRWSKPVMKGREPDGLTEFERLGGTDVELGKVYTDIDRPPFKVESTIDEKMSDEKRSFLMLRIYGDSWKVNMGKVFSGINKGKPTLIKKGLKEIKILNKKIEEMIEDLI
Ga0208011_100004735F057673GGAGMKKLKEILHESKYLKREFGDKLPTLDSVMKQHQESKEQITEGSLPKFQALKDVSDYDRDWGQTFKDIGRGYPRLDYGPRENDMYDWNSRANYQAATKEYHTHMSKVAKKLNTAIKELDGLYKVWSKIIDKHRKNDGSTW
Ga0208011_100004738F018015GAGGVKKKQVFDMTRKWKTFRLDEKLNEENESLWTWVYKGFLGGFKKAEKKGGGSVSLDEVARGVAFLVKTEFGGNAKNDFVKSLKKYIR
Ga0208011_100004743F009560N/AMPFEENRKSYMDSLYGISTLLKRWHTEIHRKDVSKNYMIKKLTEWIKKLEDLRHEIMMGRDK
Ga0208011_100004752F013943GGAGVNTFEQGLWEIIKEGSYSGGGGTGTTDIGDAWPDGLYTKRGERRYVGPASLTRGMQQIDFPASDNIYGGPDSLNNERRAKRDAGKLYKYLSDPDGNSEVKAEELRDDTPPLSPKQRVYGIHGFHRKQEYTIPPETANFYSTSETLVKPTTPPEGTKSGGIPSTPEPGSKKMGSDSGYRQVNPSGQKVFANNKKLWGKWKDHRIMGKVKGREWKGGKLVDLLPKGVN
Ga0208011_100004755F010790N/AMIKLKKILEEKVDLSDISWNHQKLLKVGSDYIHKSRDGRLWYELEDDIKKSKNRTLMRYFKKYEKARLELQHAGAMLTRAFDLEKR

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