Scaffold Ga0208011

Basic Information
Taxon OID	3300025096 Open in IMG/M
Scaffold ID	Ga0208011_1000047 Open in IMG/M
Source Dataset Name	Marine viral communities from the Subarctic Pacific Ocean - 7_ETSP_OMZ_AT15161 metaG (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300025096 Open in IMG/M

Scaffold ID

Ga0208011_1000047 Open in IMG/M

Source Dataset Name

Marine viral communities from the Subarctic Pacific Ocean - 7_ETSP_OMZ_AT15161 metaG (SPAdes)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	58581
Total Scaffold Genes	62 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	52 (83.87%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	4 (66.67%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

58581

Total Scaffold Genes

62 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

52 (83.87%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

4 (66.67%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location Name	Pacific Ocean
Coordinates	Lat. (^o)	-11.499	Long. (^o)	-81.405	Alt. (m)	Depth (m)	120
Location on Map

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Source Dataset Sampling Location

Location Name

Pacific Ocean

Coordinates

Lat. (^o)

-11.499

Long. (^o)

-81.405

Alt. (m)

Depth (m)

120

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003975	Metagenome	459	Y
F009560	Metagenome / Metatranscriptome	316	Y
F010790	Metagenome	299	N
F013943	Metagenome	267	Y
F018015	Metagenome / Metatranscriptome	237	Y
F057673	Metagenome / Metatranscriptome	136	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208011_100004722	F003975	AGGAG	MIKLKELLKEWNDTSFRDLPKRWSKPVMKGREPDGLTEFERLGGTDVELGKVYTDIDRPPFKVESTIDEKMSDEKRSFLMLRIYGDSWKVNMGKVFSGINKGKPTLIKKGLKEIKILNKKIEEMIEDLI
Ga0208011_100004735	F057673	GGAG	MKKLKEILHESKYLKREFGDKLPTLDSVMKQHQESKEQITEGSLPKFQALKDVSDYDRDWGQTFKDIGRGYPRLDYGPRENDMYDWNSRANYQAATKEYHTHMSKVAKKLNTAIKELDGLYKVWSKIIDKHRKNDGSTW
Ga0208011_100004738	F018015	GAGG	VKKKQVFDMTRKWKTFRLDEKLNEENESLWTWVYKGFLGGFKKAEKKGGGSVSLDEVARGVAFLVKTEFGGNAKNDFVKSLKKYIR
Ga0208011_100004743	F009560	N/A	MPFEENRKSYMDSLYGISTLLKRWHTEIHRKDVSKNYMIKKLTEWIKKLEDLRHEIMMGRDK
Ga0208011_100004752	F013943	GGAG	VNTFEQGLWEIIKEGSYSGGGGTGTTDIGDAWPDGLYTKRGERRYVGPASLTRGMQQIDFPASDNIYGGPDSLNNERRAKRDAGKLYKYLSDPDGNSEVKAEELRDDTPPLSPKQRVYGIHGFHRKQEYTIPPETANFYSTSETLVKPTTPPEGTKSGGIPSTPEPGSKKMGSDSGYRQVNPSGQKVFANNKKLWGKWKDHRIMGKVKGREWKGGKLVDLLPKGVN
Ga0208011_100004755	F010790	N/A	MIKLKKILEEKVDLSDISWNHQKLLKVGSDYIHKSRDGRLWYELEDDIKKSKNRTLMRYFKKYEKARLELQHAGAMLTRAFDLEKR

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0208011_1000047

Overview

Ecosystem & Geography

Associated Families

Sequences