Scaffold Ga0208011_1000023

Overview

Basic Information

• Taxon OID: 3300025096
• Scaffold ID: Ga0208011_1000023
• Source Dataset Name: Marine viral communities from the Subarctic Pacific Ocean - 7_ETSP_OMZ_AT15161 metaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 89168
• Total Scaffold Genes: 90
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 26 (28.89%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (40.00%)
• Associated Families: 5

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): -11.499
  • Long. (^o): -81.405
  • Depth (m): 120

Associated Families

Family	Category	Number of Sequences	3D Structure?
F016734	Metagenome / Metatranscriptome	245	Y
F036473	Metagenome / Metatranscriptome	170	Y
F038415	Metagenome / Metatranscriptome	166	Y
F056154	Metagenome	138	Y
F070664	Metagenome	123	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208011_100002313	F038415	N/A	MKKVIGCIAKYKKEIGGLLRHAATIAGGVLIAKGTLSTDTFTMILGSTSSIVGTGWSFVNKASHKKEVKAAFATDPVTGDVTRHFNEEKKAWESKPAA
Ga0208011_100002324	F070664	N/A	MNKNETYYALATQQGSSIKLQVIETVRGNVVKTYRYPGTLDGSPVISGDTVSFTVTIGSYRKMIIQNIKTGKKVERQIR
Ga0208011_100002345	F036473	AGAAG	MITSLANLKAILLDKVCEVKFVRRNPKPGRPTTRRMLCTNNAQLLNSVEGRTVLNYDPPRQAPSYNPNQENLIVVWDILMQGYRTINCDSVDLISTLESDETFWTYLNEKISPMSASEKMGFMNT
Ga0208011_100002346	F016734	N/A	MSEKQLKKEYETELNKLDLTDSEREAFDHDAKRSLIDLETYQETDTFSLQGYKLSKVMDDIVLAQYVDLSNDGRSVIRNGIHIPLSQVKRTWRLARVILVGPHCKFTTPGDVVCFPDDKGIKVDNLRVVGYDQSLRDCLFLNEQRFFGICQDLEDDDNKSS
Ga0208011_100002387	F056154	GGA	MTRYDKLCERHITRQVRSFYPRKFELSKEFLEAFKLEYSRLVESGQNRKTLLERIRKALTFHL