Scaffold Ga0208011_1000020

Overview

Basic Information

• Taxon OID: 3300025096
• Scaffold ID: Ga0208011_1000020
• Source Dataset Name: Marine viral communities from the Subarctic Pacific Ocean - 7_ETSP_OMZ_AT15161 metaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 98842
• Total Scaffold Genes: 108
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 20 (18.52%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): -11.499
  • Long. (^o): -81.405
  • Depth (m): 120

Associated Families

Family	Category	Number of Sequences	3D Structure?
F048585	Metagenome	148	Y
F074040	Metagenome	120	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208011_100002049	F074040	N/A	MKTLKLFEQYKELYSEQDEVEEVDVNVDVEADATDVADIPPAPTGISPEGEIYVAELLTNAFIYAPNMQDINIAAQVNKEFGRTQPRKVIETIERLVEFSDETVEQELETVDAH
Ga0208011_100002051	F048585	GAG	MESSTLESVNDESSHLYVPKIHKTIMNLNYFLTKSFNEYNYHLVENDLRLNRHDKNKLGIHFILKQIIHAVKIDKEHKKLFYYKVDKKVIEHQLVRRIFNTLPSIIKYDEVGFREFIEGQDYEVWKSPTEAQLSFRNFRNFLKRYDLKHLEKEFLANVNIKLSLLP