Scaffold Ga0208011_1000011

Overview

Basic Information

• Taxon OID: 3300025096
• Scaffold ID: Ga0208011_1000011
• Source Dataset Name: Marine viral communities from the Subarctic Pacific Ocean - 7_ETSP_OMZ_AT15161 metaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 140207
• Total Scaffold Genes: 176
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 66 (37.50%)
• Novel Protein Genes: 11
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (36.36%)
• Associated Families: 11

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): -11.499
  • Long. (^o): -81.405
  • Depth (m): 120

Associated Families

Family	Category	Number of Sequences	3D Structure?
F007550	Metagenome / Metatranscriptome	349	Y
F013467	Metagenome	271	Y
F015147	Metagenome / Metatranscriptome	257	Y
F015789	Metagenome	252	Y
F017148	Metagenome / Metatranscriptome	242	Y
F021787	Metagenome	217	N
F025853	Metagenome / Metatranscriptome	200	Y
F033643	Metagenome / Metatranscriptome	177	Y
F043619	Metagenome	156	Y
F062176	Metagenome	131	Y
F089035	Metagenome	109	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208011_100001112	F017148	GAGG	MKNQYIDWLNARDARRVVAPVEGHEGYRVVSAMTVRDLQQDDFASPVEEDCGWFGYEGLCED
Ga0208011_100001114	F089035	GAG	MTAYEMTSKMIRKPKPDALKRLEAAQAQARKQKRMIKEALETIRLNKPYKRSEDAPTLKEWNDSWIG
Ga0208011_100001116	F015789	N/A	LTLGVIYGILYPVMRDKNMKEKTVKVKGPWVDGVQTVKEISQEEWTSYTPLNRRVKGEWFRVVKW
Ga0208011_100001119	F007550	N/A	MIMKKIILFLFLFSVSLNAASLKIVPVQQKTLPNGNAYGLESGVYFELTDLHPFIMYKLQYSEDLKTWKDLVWLGTHKIAMTSPYFTWNQLPPNQCFFRIEEAW
Ga0208011_100001125	F015147	N/A	MIEKIKWLVSDLGLNEFNAWLWIIGGAALTAAVLVLLSGGFDEVFRYWRVFFLNL
Ga0208011_100001126	F033643	N/A	MKEEAPKFSSSPLWPGFSMTFKNGWEISVQFGNGHYCSNKMKDSSSRQSETAEVAIFAPDKDGFPREWWSYDETLDDVVEQPEESYVNGWLTTDQVASIINIIANKNENKSNSN
Ga0208011_100001128	F021787	N/A	MLFPVMRDMISCEEVFEADPQARAEFDAVCDEWLNEAIDAQDAEEDLVECEGCGEQWYAHQAGANGRIEWCRKCYKNDPYYV
Ga0208011_100001132	F025853	N/A	LTLAAVCGIIRVLKEKKENKMKKFLVNYIPAVHEGQENKEDKSYSYRVEMDEQFANRSEKDESAGMAAKDSESGLWKRFRWDRIQSAVAI
Ga0208011_100001145	F043619	GAG	MKRMIAEQYWKREDGEVIAVGDMNEHHAKNVLRKMLKKSRQRGLDVLEMRDKINLISGMLDDIRSELL
Ga0208011_100001161	F013467	GGAGG	MTFGDLKNWVWCEDCLEWKDADEVSFAGIEEDSYGKDVLTFNCDKCGNENKNNIVSSPTKPRG
Ga0208011_100001162	F062176	N/A	MTYEVKITTVDKNLTYIVKAENVLEAEEEAIKKLEKDVPKDYITAGQFHIEHIENLEATH