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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300025096 Open in IMG/M |
| Scaffold ID | Ga0208011_1000008 Open in IMG/M |
| Source Dataset Name | Marine viral communities from the Subarctic Pacific Ocean - 7_ETSP_OMZ_AT15161 metaG (SPAdes) |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 195459 |
| Total Scaffold Genes | 264 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 231 (87.50%) |
| Novel Protein Genes | 7 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 5 (71.43%) |
| Associated Families | 7 |
| Taxonomy | |
|---|---|
| All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales | (Source: IMG-VR) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Pacific Ocean | |||||||
| Coordinates | Lat. (o) | -11.499 | Long. (o) | -81.405 | Alt. (m) | Depth (m) | 120 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F004771 | Metagenome | 424 | Y |
| F008590 | Metagenome | 331 | Y |
| F054844 | Metagenome | 139 | Y |
| F064211 | Metagenome | 129 | Y |
| F067640 | Metagenome | 125 | Y |
| F074152 | Metagenome | 120 | Y |
| F105146 | Metagenome | 100 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0208011_1000008132 | F054844 | GGAGG | MKVGDLVRFRGSVGLVMGACKKRWAKPADVWVMWTDEDRPKIESGLLLEVINAGR |
| Ga0208011_1000008134 | F008590 | AGGA | MKPGDLVTYAFQAARWRKGLSVNVGLIVEVGKYTGNTDVKVLWTNTPNAQTEKSSGLMFVKDIRIP |
| Ga0208011_1000008136 | F067640 | GGAG | MIEVGSLLRMWGNHSKWIALDEIADTVLVVSQKTNHKMWANKAAFEVIG |
| Ga0208011_1000008146 | F105146 | GGAGG | VKVGSIVKSKYTIGGHRARMGIVIKLRAGAYEGQPLAQVFWPHRSDTGWVEAKDMEVINESR |
| Ga0208011_1000008147 | F004771 | N/A | VLGIKIGDLVKMKGSQYDTGIVGIVIDRDYHRSSIQIGIKWLGGSGKVDWEPESWLEVVSESR |
| Ga0208011_1000008173 | F074152 | N/A | MKLYLTTFVLTGIVDSTDQFFASVEINLNPPTVEASMAVLPLHAFPCEIQEGDTFYILKLTEDSTPVIVCELGANEPYDGD |
| Ga0208011_1000008180 | F064211 | GGAG | MKAGQIKMWLDQGPAILMMECLVEAAALTPEEYEKQGGHKPEQGWVIHLLQTGEMLTVHEETLHNGEMDV |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |