Scaffold Ga0208794_1021829

Overview

Basic Information

• Taxon OID: 3300025093
• Scaffold ID: Ga0208794_1021829
• Source Dataset Name: Marine viral communities from the Gulf of Mexico - 32_GoM_OMZ_CsCl metaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1333
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Atlantic Ocean: Gulf of Mexico
• Coordinates
  • Lat. (^o): 28.867
  • Long. (^o): -90.467
  • Depth (m): 18

Associated Families

Family	Category	Number of Sequences	3D Structure?
F009699	Metagenome / Metatranscriptome	314	Y
F029600	Metagenome	188	Y
F032639	Metagenome / Metatranscriptome	179	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208794_10218292	F009699	N/A	MMTDKEAQAFMQKVDSSAQFWQELHDENAPTMQIQGNTVPRCLYNLMVTKRDVNLYLVGLKPHRGWKIGDVKAYFGLKGGKQKVADAINAIHSELIGRFKEQGDAGQE
Ga0208794_10218293	F032639	N/A	MLDKNKKLINEDGFYAGSELMWGMDDVRNVLERFGRATTTSKEDVERILIAAFQDNYRLMETIDEAIGDTIVHMIEEGQLKTDEQ
Ga0208794_10218294	F029600	N/A	MKYWNGEGQYQDLFHKHWKNLVPESGRADTAEGNAMRAIAKINYDIFNNGAGNIVEQVEEMDEDGEYYTEYSINRWWEEYFDDIEEFAGLNVDRLKTKLLGYVRFDQDGGLSDLMDDYIDHIVLRVDNQSITK