Scaffold Ga0208794_1003393

Overview

Basic Information

• Taxon OID: 3300025093
• Scaffold ID: Ga0208794_1003393
• Source Dataset Name: Marine viral communities from the Gulf of Mexico - 32_GoM_OMZ_CsCl metaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5476
• Total Scaffold Genes: 12
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (41.67%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → environmental samples → uncultured marine virus (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Atlantic Ocean: Gulf of Mexico
• Coordinates
  • Lat. (^o): 28.867
  • Long. (^o): -90.467
  • Depth (m): 18

Associated Families

Family	Category	Number of Sequences	3D Structure?
F050004	Metagenome / Metatranscriptome	146	Y
F083376	Metagenome / Metatranscriptome	113	N
F087024	Metagenome	110	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0208794_100339312	F087024	N/A	GIEACCQEEYSWKIDDNTNDRVIGIDPGFGSSEFGICIMQKDKGKKAVIYAESFERESYIDIVNKINELSKKYRTKRLFVDGSWAEGIRDLRDKYMMNVQNVSFLQYGEKMLNYAANAVDFQEVKIHPSFKKLKMQLMTIKYNAKGGTNKTKVNTFDLGDAFLLAMYYYKMGSGTLAGVG
Ga0208794_10033936	F083376	AGG	MLKIYLNPEADKLIESLDLGRVSLGESVKYTVYMKNTDPEWSIHNIKIENANPELRFEAPETLKPNEVQEVHVYWTPKITNRKPLRAEFKFSGDIFIG
Ga0208794_10033938	F050004	N/A	MDQKTWAQGDFTDSATYDLSGTVYDENTFATARDISSFTGTFRLINQQGDTIFSTTQNLTLNADGTFLVKFATGATPAVQGTYKVRLRLEVSGSRLTCVGVNGSDEVYFEYD