Scaffold Ga0208794_1002306

Overview

Basic Information

• Taxon OID: 3300025093
• Scaffold ID: Ga0208794_1002306
• Source Dataset Name: Marine viral communities from the Gulf of Mexico - 32_GoM_OMZ_CsCl metaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 7402
• Total Scaffold Genes: 18
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 11 (61.11%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Associated Families: 5

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Atlantic Ocean: Gulf of Mexico
• Coordinates
  • Lat. (^o): 28.867
  • Long. (^o): -90.467
  • Depth (m): 18

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001689	Metagenome / Metatranscriptome	651	Y
F002859	Metagenome / Metatranscriptome	525	Y
F007093	Metagenome	358	Y
F033764	Metagenome	176	Y
F063608	Metagenome	129	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208794_100230611	F063608	AGGA	VYLDVLGNEKGGIMAKKDSLRTRLLREYAKVSKVAVRDPRNWKEVANRVRWERLKKILWRRYDYMQSL
Ga0208794_100230614	F001689	AGGA	MKLKKDYEMTFKEGFRLGVRLTRAKACLENARNAKILNDESMVKLQMEFANDWTDLAKNSGRKFTPITAHEPEQSAFDFGDIEYQEHLSKLPFKETG
Ga0208794_100230615	F007093	N/A	MVSLPGMPSVKHTAELYFNQDICENRRVVIENSIYDRAAETGINPVYVETWCLESNMFVENNS
Ga0208794_10023063	F002859	AGGAG	VLVIIRPDLYEYTALPMTDDLFWRRVENLRRAALTAEDFEFRLVYYNQMVELMKRCP
Ga0208794_10023064	F033764	N/A	MGLYSLKKEKVMHVDKYVVNNIGTKWTNGKSKKNQVLDSLDGTNGIQLKKLVPLLEEWFETVNGEWAHRNVELIINVKEEK