Scaffold Ga0208794_1000831

Overview

Basic Information

• Taxon OID: 3300025093
• Scaffold ID: Ga0208794_1000831
• Source Dataset Name: Marine viral communities from the Gulf of Mexico - 32_GoM_OMZ_CsCl metaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 16739
• Total Scaffold Genes: 22
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 12 (54.55%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (40.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → environmental samples → uncultured marine virus (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Atlantic Ocean: Gulf of Mexico
• Coordinates
  • Lat. (^o): 28.867
  • Long. (^o): -90.467
  • Depth (m): 18

Associated Families

Family	Category	Number of Sequences	3D Structure?
F027831	Metagenome	193	Y
F053965	Metagenome / Metatranscriptome	140	N
F069958	Metagenome / Metatranscriptome	123	Y
F077161	Metagenome / Metatranscriptome	117	N
F085538	Metagenome / Metatranscriptome	111	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0208794_10008311	F077161	GGAG	MRNLTVPEIQARFNNHQKLHRFEVDKLFEKVKHKPFTEMQYRYLEIGIRHQFIYDIETSDFSPDQNFIICYHGILRDIVTEKIEQVQDSITKKDIKKAVDEHSFDFDYRLLQTLSHNMKQAHHVIGHFSTKFDNPYFRSRCLITKQYDLIPDYGYQFYGDTWRMMKSTMKAKRNTLKNFITQTTGKDEKTFVDLKYWYITHFKDHKLWDKAMSYIIDHCVKDVNMTYQGLRKAELFNNIQRAKA
Ga0208794_10008312	F053965	N/A	MVQSIMTQYVLWREKLGKLADAIKEYKTSPFNSPAEREAKEIIIQITESQWWKDNVGSEFKWPKKYDPKAKQFGFRYPEFIQFGNFIKPRHEFCERCGLDKQGLLTTNKGRMLYAKLNCS
Ga0208794_100083122	F085538	N/A	LTSENTQYQIAVAINYWDDPKGLIKILTNDKVYEFITKFYVIDGRYEGRNDEPQSHPDYLTDLEKIYSKIHIVSMDGAKQIDKRNMYWKLAGADKMDYVIVCDSDEYIDINPNVFVSSLRTIDDRPEKCYPIKQHMEGITTMSRPRLFKAPFTFRHRQNEKTISHGSLYDKDDTEIINQMYMWFKDHPKREINSDNQSGVEGIEMWHNKEFRSKERVIADRVYYDETPTR
Ga0208794_10008315	F027831	N/A	MAKKLSGIAYGQRNLQKGQNDTQILIGLKRFIKEEFGLDFKREWYVGFDKEYGNLCRISESVGRKELERFKWKNPDLLCVSDQFGVIIVELDGAVHDRKVRKTTERNVLFRNAGIKLIVLNIADIKEFGETIQDHLAQEMKKLLGQY
Ga0208794_10008318	F069958	AGGA	MDYWEGKNQGDYYLCDRCNVAKLSEYEYEGNYNPDNDNRYCQECANWIILKHYKCESCGNSGSHRSERILPLTCQCGETLCLK