Scaffold Ga0208794_1000202

Overview

Basic Information

• Taxon OID: 3300025093
• Scaffold ID: Ga0208794_1000202
• Source Dataset Name: Marine viral communities from the Gulf of Mexico - 32_GoM_OMZ_CsCl metaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 48780
• Total Scaffold Genes: 80
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 13 (16.25%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Atlantic Ocean: Gulf of Mexico
• Coordinates
  • Lat. (^o): 28.867
  • Long. (^o): -90.467
  • Depth (m): 18

Associated Families

Family	Category	Number of Sequences	3D Structure?
F048939	Metagenome / Metatranscriptome	147	Y
F063611	Metagenome / Metatranscriptome	129	Y
F074771	Metagenome	119	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208794_10002021	F048939	N/A	MSNSTQLNVDELKDFLKHMVKNNQHIQNEGKVPVAVNIEGDAGLGKTSA
Ga0208794_100020244	F074771	N/A	MSEFILRGNKVMLDKPEKKEKESDLGIILTEEIEKEQEKELMKEWTHLNVFAIGTEVQDIKIGDKVYVRTQALHNAEIIEIDGKIKMMVIVHDIIMIWK
Ga0208794_10002025	F063611	N/A	MGLSTTDLIAESGSNNLPKTISTGNHELKINGVRLEEFKFIDGAYHFIMDMETKPIDGFEGFMKDPKDESKGRYEGQIGRVKASQYAFADGETKSGIKIQRDNSIMMFLKNLTTALGITDWFLEQDNKHETIEDFVKAFNDEAPFAGKYLHVCLAGKEYENKSGYIAYDCWFAKAQNRKYAYGTDEKSVLKYDESKHLKKIENKPVESFDDNDDFAIPNNASSDFNLD