Scaffold Ga0209616

Basic Information
Taxon OID	3300025091 Open in IMG/M
Scaffold ID	Ga0209616_1001295 Open in IMG/M
Source Dataset Name	Freshwater bacterial and archeal communities from Indian Creek, Illinois, USA - Floc-Cal metaG (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300025091 Open in IMG/M

Scaffold ID

Ga0209616_1001295 Open in IMG/M

Source Dataset Name

Freshwater bacterial and archeal communities from Indian Creek, Illinois, USA - Floc-Cal metaG (SPAdes)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	5467
Total Scaffold Genes	15 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	5 (33.33%)
Novel Protein Genes	5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (40.00%)
Associated Families	5

Scaffold Components

Scaffold Length (bps)

5467

Total Scaffold Genes

15 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

5 (33.33%)

Novel Protein Genes

5 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

2 (40.00%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater → Bacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii)

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater → Bacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii)

Source Dataset Sampling Location
Location Name	USA: Indian Creek, Illinois
Coordinates	Lat. (^o)	41.6655	Long. (^o)	-87.5437	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Indian Creek, Illinois

Coordinates

Lat. (^o)

41.6655

Long. (^o)

-87.5437

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F008546	Metagenome / Metatranscriptome	331	Y
F047578	Metagenome / Metatranscriptome	149	Y
F048842	Metagenome / Metatranscriptome	147	Y
F062545	Metagenome / Metatranscriptome	130	Y
F082372	Metagenome / Metatranscriptome	113	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209616_100129511	F047578	GGA	MKAICIDSSNKPAKIPIEQWIKQGETYTIIKIVKMGLQDGRYGVLLKEVQMSADCFPYEYYDADRFIPLDTRVLNMEEETVKEADLELI
Ga0209616_100129515	F062545	N/A	GEWKTYIIDGQHLATALEREGQLIPYIEITIESEEDLVEKMALLNNSSKSWDLMNFINAWKMIRPDYMKLFKWKNMYDIEVSMLACIASNMPSIRFGTQPIKKGTFQITNPKAEDMCKAFNDIFLKIGMADRSVKFQFLNAFMQAYNSTYSHIKVMAAIDKHMKTIKLMASGDETGTYIRKQIFKLPK
Ga0209616_10012952	F082372	N/A	MSESETGWVSALIKCDLCSHESLSVHHVSCDKLECGNCGHMSHYEVIELYT
Ga0209616_10012953	F008546	AGCAG	MKDKIAWWKLLIVFVSAIVLEANSIAGLRFLMDENWVGMVMMVAINPFLCLPMNHYTIEVKSFKQRALIALAFSLGFAVGVMTIRPFFI
Ga0209616_10012954	F048842	N/A	MKNKAGVVILTFLPIILWGLALFGEIRCIYKMCTCNWEPVGKAEIVYTVGTFTATGVIIGYLNIEDK

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0209616_1001295

Overview

Ecosystem & Geography

Associated Families

Sequences