Scaffold Ga0208957_1000798

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0208957_1000798

Scaffold Ga0208957_1000798

Overview

Basic Information
Taxon OID	3300025087 Open in IMG/M
Scaffold ID	Ga0208957_1000798 Open in IMG/M
Source Dataset Name	Groundwater microbial communities from Rifle, Colorado - Rifle Oxygen_injection A1 (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	19950
Total Scaffold Genes	38 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	35 (92.11%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Groundwater → Unclassified → Groundwater → Soil Microbial Communities From Rifle, Colorado, Usa

Source Dataset Sampling Location
Location Name	Rifle, Colorado, United States
Coordinates	Lat. (^o)	39.53	Long. (^o)	-107.78	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F056958	Metagenome / Metatranscriptome	137	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208957_100079811	F056958	AGGAG	MEENILAEEKAKSIKLADGNEYTLPPIDMTTLANIEKTMGFSLGSLGKRFESETMTTIRALVYALLKENHPDLTLDGVGHLITLKEIGLLSTTLSEIMAMSS

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