Scaffold Ga0208157_1086056

Overview

Basic Information

• Taxon OID: 3300025086
• Scaffold ID: Ga0208157_1086056
• Source Dataset Name: Marine viral communities from the Subarctic Pacific Ocean - 5_ETSP_OMZ_AT15132 metaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 777
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → environmental samples → uncultured marine virus (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): -12.999
  • Long. (^o): -80.801
  • Depth (m): 90

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003677	Metagenome / Metatranscriptome	474	Y
F041249	Metagenome	160	Y
F085570	Metagenome / Metatranscriptome	111	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0208157_10860561	F085570	AGGA	MHIDSYKIWSYDYDYKNGKKSKTTSIRQHLVSEECIDSKSLINLLSDLDTAWHNHYGKN
Ga0208157_10860562	F041249	GGA	MDEEQLLKSTSKRTRRNANTIKYGMFGLSLGERNYNRLHEYCIKHNLYKATLVKSLIVDYLDRAEQKQKDKECT
Ga0208157_10860564	F003677	N/A	VYEIEYEATYVTKWQVLADNEAGAFDTWLAENKQDLVTEDGTNCVCSYVKDYTQLGKTQIIAEIKHNKEDDEVYADES