Scaffold Ga0208157_1026984

Overview

Basic Information

• Taxon OID: 3300025086
• Scaffold ID: Ga0208157_1026984
• Source Dataset Name: Marine viral communities from the Subarctic Pacific Ocean - 5_ETSP_OMZ_AT15132 metaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1687
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (66.67%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → unclassified viruses → unclassified DNA viruses → unclassified dsDNA viruses → Prokaryotic dsDNA virus sp. (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): -12.999
  • Long. (^o): -80.801
  • Depth (m): 90

Associated Families

Family	Category	Number of Sequences	3D Structure?
F008882	Metagenome / Metatranscriptome	326	N
F013295	Metagenome	272	N
F044193	Metagenome	155	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208157_10269842	F044193	AGGAG	MIIKEYQKEYKDYFMFITVHQSLIEVSMHSYIDDDFQYTNRFIDYSPKEVYEILCHYIDNHEEQAIA
Ga0208157_10269844	F008882	N/A	MSVIKYNFSKPKINRQELELLNWFLAHTNDNPLINPQALELLKANGYSAKNYQDLVNKVKTILKTYKTKGEK
Ga0208157_10269846	F013295	AGGAG	MKVNDLTPKQFARREIIKYLRDLFDNPAKYIKDFDSYTHRQQEEILRHISLDEHR