Scaffold Ga0208157_1017719

Overview

Basic Information

• Taxon OID: 3300025086
• Scaffold ID: Ga0208157_1017719
• Source Dataset Name: Marine viral communities from the Subarctic Pacific Ocean - 5_ETSP_OMZ_AT15132 metaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2213
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (66.67%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): -12.999
  • Long. (^o): -80.801
  • Depth (m): 90

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003020	Metagenome / Metatranscriptome	513	Y
F004988	Metagenome / Metatranscriptome	416	Y
F015532	Metagenome / Metatranscriptome	254	Y
F030928	Metagenome	184	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208157_10177191	F015532	GAGG	MISNKENKVRKEIPNRMMSATFALPIDGRRVVGILDYTANETGLTPMAFWIKLKPTDSYLDRELRASGKLISRCLQHGESLKELVDTLSQDNVI
Ga0208157_10177192	F030928	AGGAG	MKKILTELKAYINFLLAGLTIFVCVIVIIVNSRYIVKLENTIDTMWREIEQVKETNIDLYQFIEEHKNDFE
Ga0208157_10177194	F004988	N/A	MVERVRAICPRCDGNSFIIVSGEEVDCPMCEEEFMHLGMKVTTHNGYVMLPVEQTRTNVEGGVESKVKWSRETLPEVNK
Ga0208157_10177195	F003020	AGGAG	MPDISSFKSVSVSVATHNQLKTLAENRFEVPVSIQKVIEFLLDKELKKKNGRTR