Scaffold Ga0208157_1014581

Overview

Basic Information

• Taxon OID: 3300025086
• Scaffold ID: Ga0208157_1014581
• Source Dataset Name: Marine viral communities from the Subarctic Pacific Ocean - 5_ETSP_OMZ_AT15132 metaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2508
• Total Scaffold Genes: 14
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (7.14%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → unclassified viruses → unclassified DNA viruses → unclassified dsDNA viruses → Prokaryotic dsDNA virus sp. (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): -12.999
  • Long. (^o): -80.801
  • Depth (m): 90

Associated Families

Family	Category	Number of Sequences	3D Structure?
F046070	Metagenome / Metatranscriptome	152	N
F048244	Metagenome / Metatranscriptome	148	Y
F056151	Metagenome / Metatranscriptome	138	Y
F101084	Metagenome / Metatranscriptome	102	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208157_10145811	F056151	N/A	LKNLKTNHYNSKIIKTKKLKLNNNTYLGFLINDLQNIKLINNLKIENVIEFNLKGLTFINKNNIKKSTLQSI
Ga0208157_101458110	F046070	N/A	MNLKRIKELRNVVHDAQTKMDLISKRVMQGGLSLDQQILHLDNFAANQSRHMLSNEELYKLLKNE
Ga0208157_10145816	F048244	N/A	MKVELTKKEIDRIYFDLKNYVKTTYYVDRLNELSENDKEECKIELELIEKFSKL
Ga0208157_10145818	F101084	N/A	MYRDDLVYDFNDEMWNLYHNGTINNEDDFWNEKNTWIDNQVIYTYECKQICDKLDYDIFEEHDIYGKANNWSQAAYAAIYDLLNDHNDALTYDEMKLQEQEANA