Scaffold Ga0208157_1013608

Overview

Basic Information

• Taxon OID: 3300025086
• Scaffold ID: Ga0208157_1013608
• Source Dataset Name: Marine viral communities from the Subarctic Pacific Ocean - 5_ETSP_OMZ_AT15132 metaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2619
• Total Scaffold Genes: 12
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 12 (100.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): -12.999
  • Long. (^o): -80.801
  • Depth (m): 90

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002430	Metagenome / Metatranscriptome	560	Y
F007947	Metagenome / Metatranscriptome	342	Y
F049286	Metagenome / Metatranscriptome	147	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208157_10136083	F002430	AGGAG	MITLKLPKKQVNAILVALDAEIEMQLGGRPVDWESFPEVAALMMAYYTTRCKFEEDDCCD
Ga0208157_10136085	F049286	AGGAG	MPKYEVTRSYTVVCVATVEADSPDHAEDIACNSGDIHWKEYEDDYNTQIYCSAIPDE
Ga0208157_10136086	F049286	AGGAGG	MPKYEVTRSYTVICVAKVEADTHYHAEEIACDSGDIHWKEYDGDYDDEVYVEEIEDA
Ga0208157_10136088	F007947	AGGAG	MLNCNTILCIQNQMPDVGMDDMFIIGFLVVAVVVVVYLMIEAWKEN