Scaffold Ga0208157_1008884

Overview

Basic Information

• Taxon OID: 3300025086
• Scaffold ID: Ga0208157_1008884
• Source Dataset Name: Marine viral communities from the Subarctic Pacific Ocean - 5_ETSP_OMZ_AT15132 metaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3410
• Total Scaffold Genes: 10
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (20.00%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (40.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): -12.999
  • Long. (^o): -80.801
  • Depth (m): 90

Associated Families

Family	Category	Number of Sequences	3D Structure?
F015097	Metagenome	257	Y
F016393	Metagenome	247	N
F027052	Metagenome / Metatranscriptome	196	N
F028037	Metagenome	193	N
F040631	Metagenome	161	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0208157_10088841	F015097	N/A	MKYTYMLNMDNDRAESCDVIVKFNTNDELEFDGFTSIVSEPPLYSDDLAYLEEWVIQGRERWEPMGT
Ga0208157_10088842	F040631	N/A	MNDKALTKYRQVTGACTRFIERHQDKELLEDEAQILINDNKASRSESDWQVIKDFQDECCRTVYKCTKKGLIKPATDYVPTHPTL
Ga0208157_10088847	F016393	GAG	MARGEINAVLGMTEGKFRTMIKSALRPCWRNSSRKTFIQSVRKRGINPATGRERFVVVCVDCGKEMGISEKERRTKIDGTLEKRAKSVYEIDHVDGITPFTDVQTLETLTPHFRDMIYGKQEVVCVACHKVRTANQRKKSKLVNK
Ga0208157_10088848	F027052	N/A	MTTDLDEARQYADTMLEALDVMGRAMYFCLNHPNSSEFKAHRKLLIGAHERMGKDTTHFLAQIDEPEMPYEPTEEELAQHG
Ga0208157_10088849	F028037	AGGA	MPCYRITYTRRDMPSPCGAIKTAHTEDEAIKCLTTGSKTKGYKLKKTNVPITITNIKEI