Basic Information | |
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Taxon OID | 3300025086 Open in IMG/M |
Scaffold ID | Ga0208157_1008024 Open in IMG/M |
Source Dataset Name | Marine viral communities from the Subarctic Pacific Ocean - 5_ETSP_OMZ_AT15132 metaG (SPAdes) |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 3633 |
Total Scaffold Genes | 7 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 4 (57.14%) |
Novel Protein Genes | 3 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (66.67%) |
Associated Families | 3 |
Taxonomy | |
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All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico |
Source Dataset Sampling Location | ||||||||
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Location Name | Pacific Ocean | |||||||
Coordinates | Lat. (o) | -12.999 | Long. (o) | -80.801 | Alt. (m) | Depth (m) | 90 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
---|---|---|---|
F000479 | Metagenome / Metatranscriptome | 1092 | Y |
F002859 | Metagenome / Metatranscriptome | 525 | Y |
F007401 | Metagenome | 352 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0208157_10080241 | F000479 | AGGA | MSKAVNILEVLEKAQQSPASVSKRNKQAIVDAYGRALTMQKVLADFIKVNRQLMIDLSMSENANLLHGRDYSLHVTQKLGAKIDTQLVKEKLGEIAYHQCKVPTQYKQIQAMPLSETTVSKNKKATIDEVADFRISA |
Ga0208157_10080244 | F002859 | N/A | VGIKYASLKQKEKVMQLILVRPDRYSYVKLPMTDSLFWRRVENLRRAMLTAQDFEFRLIYYNQMIELMKESP |
Ga0208157_10080247 | F007401 | AGG | MSDQEILKQRDLLDAILASRTTDQYERIESMKVMDSIYFKENLPENVVLFPLQRIKRYVHQTTRKPSKKSL |
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