Scaffold Ga0208157_1004703

Overview

Basic Information

• Taxon OID: 3300025086
• Scaffold ID: Ga0208157_1004703
• Source Dataset Name: Marine viral communities from the Subarctic Pacific Ocean - 5_ETSP_OMZ_AT15132 metaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5051
• Total Scaffold Genes: 18
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (5.56%)
• Novel Protein Genes: 9
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (11.11%)
• Associated Families: 9

Taxonomy: All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Opitutae → unclassified Opitutae → Opitutae bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): -12.999
  • Long. (^o): -80.801
  • Depth (m): 90

Associated Families

Family	Category	Number of Sequences	3D Structure?
F009699	Metagenome / Metatranscriptome	314	Y
F020115	Metagenome / Metatranscriptome	226	Y
F025275	Metagenome	202	Y
F025729	Metagenome / Metatranscriptome	200	Y
F027835	Metagenome / Metatranscriptome	193	N
F029600	Metagenome	188	Y
F032639	Metagenome / Metatranscriptome	179	Y
F048249	Metagenome	148	N
F069998	Metagenome	123	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0208157_100470310	F025729	N/A	MTDEIIARLEFFEETYAGEIETWVDPVTKTYYHVPIEIVRDFDNIEKL
Ga0208157_100470312	F020115	N/A	MMNNMMTYEQFEVLRKWADRVANTANDTDTNIRSIDLVHDIAGILANDEHFLPRL
Ga0208157_100470314	F069998	N/A	MKLGKIKEHMTKKELIDLMAGYPDDASVVIEVHDTSLHEDLYDFTFDAISWNRFDNTTSNPMDAFDYKEMHELRLTAINHNEK
Ga0208157_100470315	F009699	N/A	MITEDLNLQEMMTDKEAQAFMQKVDSSAPFWVELHDEDAPTMQIQGNTVPRCLYNLMVTKRDVNLYLHGLKPHRGWKIGDVKAYFGIKGGKQKVADAINAIHSELIGRFKEQNDEKTTD
Ga0208157_100470316	F032639	N/A	LDDLKSRMMKKQLINEDGFYAGSELKWGMDDVRNVLERFGRATTTSKEDVERILIAAFQDNYRLMETIDEAIGDTIVYMIEEGQLKTDEQ
Ga0208157_100470317	F029600	N/A	MKYWNGEGQYQDLFDKHWKNLVPVLGEADTPEGNVIRAIARINHDVFNNGACNIVRQTEEIDDYGDYYTEYEIERWWEDFFEEISEFARLDADRLKRKIIYSVQHDTDNGLSDMLDDYIDHIVLKVDNQLVTK
Ga0208157_100470318	F025275	N/A	MKYYALLHAVCGLAEGYSDTTVRWFNDLDKALEAKGKLVATLMDDDNAESCTTSTDGTESVINYDIEECEHEIVKIIELKPTWPESKDIREYLVWDQMNCEAPFDGDYMPTDMAVIKDLCERQEAVADTFDVEAFHEFVRDIWYGNTAMFDADDLCIYYFKLPKEFKS
Ga0208157_10047034	F027835	N/A	MKTQQHIDALYERRKTAGGFESALIDAYMKADGGNAKLLEDAFKGSRFDLTPKPKYNHGVEVLRNAAYWSGNRDEYLNDNKTAYQIIDEYLQECEALDKIVNE
Ga0208157_10047037	F048249	GAG	MKTTSKQSDEMKTSIFNTRIIRKGSKVLYRGSWGRDAQTIAEVIAIEQTDGPNEKYGDEVDAVGLDEHYVLTLNNGHWCYSYQVDGLVQLPENQSVAK