Scaffold Ga0208157_1004183

Overview

Basic Information

• Taxon OID: 3300025086
• Scaffold ID: Ga0208157_1004183
• Source Dataset Name: Marine viral communities from the Subarctic Pacific Ocean - 5_ETSP_OMZ_AT15132 metaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5442
• Total Scaffold Genes: 17
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 15 (88.24%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): -12.999
  • Long. (^o): -80.801
  • Depth (m): 90

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002593	Metagenome / Metatranscriptome	545	Y
F024924	Metagenome	204	N
F038424	Metagenome	166	Y
F070149	Metagenome / Metatranscriptome	123	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0208157_10041831	F024924	N/A	FEDIKSTKHRIIVSFNDEEKAKRYLRSKGYRYQEVYSFKEDRALLYKNFKNSWVKLASKFDYLNDNTMEMGTVWNIETI
Ga0208157_100418315	F038424	GGAG	MNWTKHLTYIIIIIILQLLNFHAVGFTKHKSDWCDGFYNQYKEGL
Ga0208157_10041832	F002593	GGAG	MSKLIYSRNGSETTESIDNASPMIKAIWNQAHFFGANIVRVRSEKNRFGNDTGRTFNSFHHGRVSVYKQKDKVHENNALYFARKIPLTKVNKGMQILEVASSLDVQNTLDTIDAIQYYSETSFLGRLWNRIRYGTPMSITS
Ga0208157_10041835	F070149	AGGAG	MQTIYQIVEEVCARDFPVLARLSDTQQKKLIDIIYEDVLSGDNPTEIAEHKLYDYIEEFIAKAISLSIDDVVDFYEENTNA