Scaffold Ga0208157_1003560

Overview

Basic Information

• Taxon OID: 3300025086
• Scaffold ID: Ga0208157_1003560
• Source Dataset Name: Marine viral communities from the Subarctic Pacific Ocean - 5_ETSP_OMZ_AT15132 metaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 6037
• Total Scaffold Genes: 18
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 16 (88.89%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): -12.999
  • Long. (^o): -80.801
  • Depth (m): 90

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003073	Metagenome / Metatranscriptome	509	Y
F023756	Metagenome / Metatranscriptome	209	Y
F046340	Metagenome	151	Y
F075986	Metagenome / Metatranscriptome	118	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208157_100356016	F023756	AGGA	VKTKHEKIMTEFDHDWNDVSIFEKLPVRKTAGKRNDWKRDRKAARKVKQSMQEKNYA
Ga0208157_100356017	F075986	AGGAG	MKYTDDQIADACMKCVDDWDMDTLLQFAYDEMYHHYTEVASAESLDAFMEDMSDED
Ga0208157_10035604	F003073	N/A	MNPKERMAYWEKIREKERIQRRNRIGKLSIDQRAAVIKVHELLDSILDTALYPDMGGIAAVSAYELQELSHANDTLQFQFNLTKGE
Ga0208157_10035607	F046340	AGGAG	MSDNYDSGFDLVLSNDELNRLMAYYYDKCLPEYRADNEDDMWYGYQIGDRMFDLNVWTDDMTDELTCVVYECDWINDNWQTNCRHSWTLT