Scaffold Ga0208157_1003149

Overview

Basic Information

• Taxon OID: 3300025086
• Scaffold ID: Ga0208157_1003149
• Source Dataset Name: Marine viral communities from the Subarctic Pacific Ocean - 5_ETSP_OMZ_AT15132 metaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 6557
• Total Scaffold Genes: 26
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 26 (100.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): -12.999
  • Long. (^o): -80.801
  • Depth (m): 90

Associated Families

Family	Category	Number of Sequences	3D Structure?
F012581	Metagenome	279	N
F023319	Metagenome	210	N
F024676	Metagenome	205	Y
F104989	Metagenome	100	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0208157_100314912	F012581	AGGAG	MAKYTLYAKKVYYYRKDINAQDSKSAEKRGADYEADDNAERLFEPSGEEFYITSIEENEDEX
Ga0208157_100314917	F104989	GGAG	MKGNNMTPQEHWELHQGVWSNLGCDMQVYKQDSDRIIYVDKNSKWAYKYEHGVIERKLQTNPDRRYRXNIKK
Ga0208157_10031495	F024676	AGGA	MRKEMYVIAMPYPFNTKLPDILEEDDGTIMYFKNKGEAKSFLQNLYDERQIHMQALIDDNIDIMRVQXQ
Ga0208157_10031496	F023319	AGGAG	MSRKIKCHRCKDNKAYPEDMENNVSNLLLCDDCYTELRYLMADYLNINLQEINVXVEKTK