NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208157_1002077

Scaffold Ga0208157_1002077


Overview

Basic Information
Taxon OID3300025086 Open in IMG/M
Scaffold IDGa0208157_1002077 Open in IMG/M
Source Dataset NameMarine viral communities from the Subarctic Pacific Ocean - 5_ETSP_OMZ_AT15132 metaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)8545
Total Scaffold Genes13 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)12 (92.31%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Archaea → unclassified Archaea → archaeon(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)-12.999Long. (o)-80.801Alt. (m)Depth (m)90
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F021785Metagenome / Metatranscriptome217Y
F058077Metagenome135N

Sequences

Protein IDFamilyRBSSequence
Ga0208157_10020773F021785GGAGMAVDYRGQPITQQTAFTTTGIMNRKPEPVKPLRMQAVRKPEPKVVQENLPEERLPQINLENLRDDDKRILNIHLTPSLKNVFNRIFGQDIFPEFGLTENTVSIPKSIVVDRFGSLDNFQKMIRRDDNNVPPSQGIMTSPQTNKIV
Ga0208157_10020776F058077AGGAGMMKRYMEGELAPDVAKRPNDKMEFSGGYSGPKLGPDVEGKAKKANNKVDPAIFRMAEEKDYS

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