Scaffold Ga0208157_1001578

Overview

Basic Information

• Taxon OID: 3300025086
• Scaffold ID: Ga0208157_1001578
• Source Dataset Name: Marine viral communities from the Subarctic Pacific Ocean - 5_ETSP_OMZ_AT15132 metaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 10132
• Total Scaffold Genes: 16
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (18.75%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): -12.999
  • Long. (^o): -80.801
  • Depth (m): 90

Associated Families

Family	Category	Number of Sequences	3D Structure?
F008105	Metagenome / Metatranscriptome	339	Y
F014794	Metagenome / Metatranscriptome	260	Y
F018622	Metagenome	234	Y
F018815	Metagenome	233	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208157_10015782	F018815	N/A	MNISLEKVSNFLKPFLLQDIVIRTNKKVLKKGKFKIFQVKQYYINLTLEINGANKNYEIPYPFKMDYDEDRGVLNYHLSSFIPLNQMTRVKFLDSSSKSKLYDNLVFILPSDGTTLK
Ga0208157_10015783	F018622	N/A	MIVQKATLDSLLSNNVLEIRFPRRIAKPGLAATRRMLCTNSLDLLNSVNGRISLNYFAPKGPRKPYLGPDNLSVAWDIMMQNYRNINCNQVDVIQEIPANEDFWVYFNENIYPLSQQQKFNFMNS
Ga0208157_10015784	F014794	AGG	MRSIDSLAPTRSLIDLTQKDKGDFGLDDFDLDFIFDDILLVEYVDESENGDEIVRNGIVVPTNALTKAWRKGRVALAGPDTKHAKVGDIVIFPNNMGVTISNITIKGGKKVGKAIFLNEERMFGICKPKDDSTKSNS
Ga0208157_10015785	F008105	N/A	MNFFQLQNKLFYSKKDNAGVLDSEGEQAFVPFLFNRWLSFYNKELPGFVNETLNKFGGIFDDKQEVYKLYYYLIPRLKWQRISYIKKKKKEEDELEGLDTIAKNKNISKRELHQYVELEKILRK