Scaffold Ga0208157_1000592

Overview

Basic Information

• Taxon OID: 3300025086
• Scaffold ID: Ga0208157_1000592
• Source Dataset Name: Marine viral communities from the Subarctic Pacific Ocean - 5_ETSP_OMZ_AT15132 metaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 19072
• Total Scaffold Genes: 35
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 17 (48.57%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (50.00%)
• Associated Families: 6

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): -12.999
  • Long. (^o): -80.801
  • Depth (m): 90

Associated Families

Family	Category	Number of Sequences	3D Structure?
F019754	Metagenome	228	Y
F022313	Metagenome	215	Y
F023484	Metagenome	210	N
F044802	Metagenome	154	Y
F075429	Metagenome	119	N
F087900	Metagenome	110	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0208157_100059212	F022313	N/A	MTYQQPQQEYELDKLERILKELQSVIEREKKRHMVNEHLSHSMRDLLEYEIIPLLEAEVNYDPTPTTAYDFFHQ
Ga0208157_100059213	F023484	N/A	MNINTKTGELLIATLGRYTSKTEKIIFFKTRAGSLVSSYYVSTFNSIKEGDGLMLSNEWGRDQVLDADQVAKCKTFIRNHS
Ga0208157_100059215	F044802	AGG	MINDPTATALYRAREDLRMLETCPTWYDHLDKVEAAMAEEDRIYDIRVAAGWELDEGGWCVPSPETGEMILEWDWLNFGLSYPEDANCCSN
Ga0208157_100059216	F019754	N/A	MACELGEWPPSEADIEEMFKAGEIDDYDREKALDELIAQELWRESLPCSVPSPQELNPGL
Ga0208157_10005922	F087900	AGGAG	VQQKINLYYCQVDDDDDHFPLAIARFTAYDEDHKPLSVEQVTYESDPNYFQAQVSAALSCGVDVSVITASPMEDFAWIKQLSQQA
Ga0208157_10005927	F075429	GAG	MTGTTELPETVTVFLEDGSVAVTVGHLTGWVSSAHLVEPKANQLMRAWLEQKSEALLNEDYDGAA