Scaffold Ga0208157_1000548

Overview

Basic Information

• Taxon OID: 3300025086
• Scaffold ID: Ga0208157_1000548
• Source Dataset Name: Marine viral communities from the Subarctic Pacific Ocean - 5_ETSP_OMZ_AT15132 metaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 19925
• Total Scaffold Genes: 22
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (27.27%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): -12.999
  • Long. (^o): -80.801
  • Depth (m): 90

Associated Families

Family	Category	Number of Sequences	3D Structure?
F008723	Metagenome / Metatranscriptome	329	Y
F011971	Metagenome	285	Y
F019032	Metagenome / Metatranscriptome	232	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208157_100054817	F019032	N/A	MSEEKKNITKFIERLSSKNYAKAHKYLKQVVEDKILKRINKATEKPLF
Ga0208157_10005485	F008723	N/A	MATTIQNFFSRAADKQFARDFLFRVKQINIEGVTFDGDTDLVYARSAQLPGRNIENKVVNYYGQAFNIPGKSTYPGSEAYSIEFYHDEGIDLRSKFELASRNVFDNETSTGQYGMPGDESVINLDVINKELNVIQSIELVGASLRDINAVDYSIAEGTGEILNFSVTFAYHFYRNFS
Ga0208157_10005487	F011971	N/A	MARNNLQQSVLNKSRADKFLLVFDVPPILKEFSKKFNQDNKHIIPDSVQFSIFGTAVPEITVPAIENRYAGNTLYVSSHSKNSYPPVSVKFKIDNEYKNYWVMYNWLNLLHDQREGKYNAREIQIDKNFQDYQVNLTIFGKDEFNNSRIKFTYTKAFPVSIDTIDYDYQNTDEIISGFTFVYSQLHTEVVDF