Scaffold Ga0208157

Basic Information
Taxon OID	3300025086 Open in IMG/M
Scaffold ID	Ga0208157_1000450 Open in IMG/M
Source Dataset Name	Marine viral communities from the Subarctic Pacific Ocean - 5_ETSP_OMZ_AT15132 metaG (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300025086 Open in IMG/M

Scaffold ID

Ga0208157_1000450 Open in IMG/M

Source Dataset Name

Marine viral communities from the Subarctic Pacific Ocean - 5_ETSP_OMZ_AT15132 metaG (SPAdes)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	22581
Total Scaffold Genes	44 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	20 (45.45%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	3 (50.00%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

22581

Total Scaffold Genes

44 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

20 (45.45%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

3 (50.00%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location Name	Pacific Ocean
Coordinates	Lat. (^o)	-12.999	Long. (^o)	-80.801	Alt. (m)	Depth (m)	90
Location on Map

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Source Dataset Sampling Location

Location Name

Pacific Ocean

Coordinates

Lat. (^o)

-12.999

Long. (^o)

-80.801

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F053550	Metagenome / Metatranscriptome	141	Y
F056918	Metagenome	137	Y
F074050	Metagenome / Metatranscriptome	120	Y
F077815	Metagenome / Metatranscriptome	117	Y
F092746	Metagenome	107	Y
F092866	Metagenome	107	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208157_100045010	F056918	GGAG	MKHLKVGDIVGAVFLGSSCECEVIEITDKKSKLYKLRMKSGTILPGVTWFKNLDAKQKKNKPWHIVKYLGHKEPKVIEKDSIQKADLDKAIAKQKKFLRGEIKD
Ga0208157_100045019	F077815	GGA	MDGKDLKNRIKQIIREEVNQLIKEESYKFGTLADPKDMDPNDPMVKVSGFATLNRSSIRGQVVDRLSGALATAKDAAKGGPNSYQAYKQLQDLISDAGILYKLIGAELDIANQLESKRLKGGRRSIPIPKQ
Ga0208157_100045020	F074050	N/A	MKRSYIKELVKEELQKIKNEAAGRAVSRGTVTDNTRLAMVLSSLGKRAKGSFQKRKVVSQVILKLAAALEITPNEVLRAYIDYKKDAKGEASTKVKKDD
Ga0208157_100045027	F053550	N/A	MTLYFQLKDQDRFNMKVTNKFQRKVLKRHPDASLTYTETGVRVMVGDTYLAEEFYLPETHDVEKAWEYAALACRTKQQFNRTHPMRMDLSDIESKINRINKRRGARHKRK
Ga0208157_100045030	F092866	N/A	MGFHKRYIDDEQIIDIYRNNGCQAVIDWYQKGVDAIILSGELSETVHTLLNILEVDKIRGFNRISEVISEASLLKGNKN
Ga0208157_100045036	F092746	GGAG	MSTVKNAPQVKIQLDEADNMIQILQDVIRRGMKIDPSEAQRRFKVIRDKIKYAQDNIQN

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0208157_1000450

Overview

Ecosystem & Geography

Associated Families

Sequences