Scaffold Ga0208157_1000367

Overview

Basic Information

• Taxon OID: 3300025086
• Scaffold ID: Ga0208157_1000367
• Source Dataset Name: Marine viral communities from the Subarctic Pacific Ocean - 5_ETSP_OMZ_AT15132 metaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 25627
• Total Scaffold Genes: 40
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 25 (62.50%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): -12.999
  • Long. (^o): -80.801
  • Depth (m): 90

Associated Families

Family	Category	Number of Sequences	3D Structure?
F022422	Metagenome / Metatranscriptome	214	Y
F031522	Metagenome / Metatranscriptome	182	N
F066741	Metagenome	126	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0208157_100036716	F066741	AGGA	MPKLKNHETFVDFSRFVCFVMAIFSAHDFNLSSSSIDRFDMSLGKDVDHNHPVIKWVKMLMEKYDISDLVDEHIVGEDPPLNDAECSKRLKNFFEAFEKQTGYKPEQAIKDIRSFMN
Ga0208157_100036727	F022422	AGGAG	MTKEKQEDKSNLLFTCPKHGKEAYFSIKKFEKHPKWGKDIVYVWFKDAKRGDEKMWCRILKGDRKKGIGILDNQPFNQIQYKVGDKFKYHTDADGITWKVGKA
Ga0208157_100036730	F031522	AGGAG	MTKTKENESPFALKGKQKKLVIQSCELLDNKSQLSSDWNRIIKPELILLFEDHSQYSAVNHTLTGLGCVKNKTHYAIHKNVKEYNMFDSENFKKQYPDLFKKFSKKNVRTNWTYSIKEV