Scaffold Ga0208157_1000325

Overview

Basic Information

• Taxon OID: 3300025086
• Scaffold ID: Ga0208157_1000325
• Source Dataset Name: Marine viral communities from the Subarctic Pacific Ocean - 5_ETSP_OMZ_AT15132 metaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 27600
• Total Scaffold Genes: 56
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 22 (39.29%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): -12.999
  • Long. (^o): -80.801
  • Depth (m): 90

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001724	Metagenome / Metatranscriptome	645	Y
F015078	Metagenome	257	Y
F063770	Metagenome	129	Y
F085580	Metagenome	111	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208157_100032544	F063770	AGGTGG	MTYPNPISSPYVLFKPMKRILTLKERSERRAIIENAWFNHEISDEQLKAEYDALGIKLPSQNRLEGG
Ga0208157_100032547	F015078	AGGAGG	MTKTIEQKFTCNVNYQFDITLEDLRDLFCTMGQGSNYWATDVTIGNIEVEEDEGIFYVKSGQDYEHQGCCMWLKELTLDSPITVEDIEDDKHHFKVKDVLTAIEKIISGKTNLNSDDCNSVFEAFKDNDLSLIDASVADSILQITTYNTLVYG
Ga0208157_100032551	F085580	AGGAG	MIIKSNSTFSLVQTITDQILLVVNGTVSQPVLRSWHISQKQDVLYEWNRITS
Ga0208157_10003259	F001724	N/A	MQTEKPKDSQQKTKQIDDEKPDYQEKITFLVSTVAQGFILTWCLLVLSLGYVKLPNKLFGIDIPDQPRVDSTFAAGLLGNILGGLGISVNAAQGAKKKKKEGENGLNTNSPNGYQTLIIKQPLEIIANKPEVIKVDPTKTKP