Scaffold Ga0208157

Basic Information
Taxon OID	3300025086 Open in IMG/M
Scaffold ID	Ga0208157_1000276 Open in IMG/M
Source Dataset Name	Marine viral communities from the Subarctic Pacific Ocean - 5_ETSP_OMZ_AT15132 metaG (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300025086 Open in IMG/M

Scaffold ID

Ga0208157_1000276 Open in IMG/M

Source Dataset Name

Marine viral communities from the Subarctic Pacific Ocean - 5_ETSP_OMZ_AT15132 metaG (SPAdes)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	30970
Total Scaffold Genes	49 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	31 (63.27%)
Novel Protein Genes	5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	4 (80.00%)
Associated Families	5

Scaffold Components

Scaffold Length (bps)

30970

Total Scaffold Genes

49 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

31 (63.27%)

Novel Protein Genes

5 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

4 (80.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Bacteria → Proteobacteria

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location Name	Pacific Ocean
Coordinates	Lat. (^o)	-12.999	Long. (^o)	-80.801	Alt. (m)	Depth (m)	90
Location on Map

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Source Dataset Sampling Location

Location Name

Pacific Ocean

Coordinates

Lat. (^o)

-12.999

Long. (^o)

-80.801

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004336	Metagenome	443	Y
F006818	Metagenome	364	Y
F028617	Metagenome	191	Y
F052257	Metagenome	143	Y
F055659	Metagenome	138	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0208157_10002761	F052257	N/A	DRGFEVVGDVKFLDLINEDGELTVIGSVIDCSTSHTGARFIQWHHTLDTQQLLDADEAGDDDLRLTKPALDNALELMTK
Ga0208157_100027630	F028617	AGG	MSEKVWKKGHVWTEKHLKASLRLVDVRNFAKRKMAGLEDDIHDSDWGPIGDASLKDYLTGYYAALDDLTKWVMESVDD
Ga0208157_10002765	F004336	GAG	MLFSTGRYPSTMGAGGQQDVEFCRYIEWVWFKRCVWLMGIGLAFGGIGLYVGYYYDTVVTEYGMAIWGVAWLYNGFLMFVLAVSVILSTIKALVVKAFISPEVQVGQAATRTAQMMRKGG
Ga0208157_10002766	F006818	AGGAGG	MAGPPQMTTLARKPQHTQPEEPQRDVAPAPNVLTRQPVQQQMMPSAETMSDEELDLYVKRLSMRHKRLSRKWWGLRRKHGKDECPYCGMLTGGGFCKLHQRDYDEYLSALSTRQNRRFGL
Ga0208157_10002767	F055659	GGAGG	MSGYAGSPSGYLNPVAVDKIQHPDYDAKAAENTTMRMVQYLYPVIKNSVEMLEALCKETDVQVPTDLADNMEFLKTVYNTQIDWHPRTMYGDEAAEELNARLTLHEEWATEDNAHHSVLNWQNPYGSDGQLQQAPAVTQQPIMPNPYMQQQMPMQGGASMFKPWTWFGVGGAAATQPQAWQLPPPALDTLANGEQFYTANGGGPPPLAQQQGYLTLPVGAIGWNMAGQPIDMNGMVVATTGEKLMNTALSRIL

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0208157_1000276

Overview

Ecosystem & Geography

Associated Families

Sequences