Scaffold Ga0208157_1000253

Overview

Basic Information

• Taxon OID: 3300025086
• Scaffold ID: Ga0208157_1000253
• Source Dataset Name: Marine viral communities from the Subarctic Pacific Ocean - 5_ETSP_OMZ_AT15132 metaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 32688
• Total Scaffold Genes: 49
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 36 (73.47%)
• Novel Protein Genes: 9
• Novel Protein Genes with Ribosome Binding Sites (RBS): 8 (88.89%)
• Associated Families: 9

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): -12.999
  • Long. (^o): -80.801
  • Depth (m): 90

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001582	Metagenome / Metatranscriptome	668	Y
F001942	Metagenome / Metatranscriptome	613	Y
F002221	Metagenome	581	Y
F002716	Metagenome / Metatranscriptome	535	Y
F006845	Metagenome / Metatranscriptome	363	Y
F007417	Metagenome	351	Y
F008595	Metagenome / Metatranscriptome	331	Y
F012117	Metagenome / Metatranscriptome	283	N
F034894	Metagenome	173	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0208157_100025310	F012117	AGGAG	MDILGGMSNSSNESQQVYLAFKTSHQQFFANGETPVEFQYLQLDPSTFKSGWGRYTKADGFEYHWDDKFGVVAPKPADDYKRAFSAWVFPQGAQHAFLWQRFTFAESSAFNTILGSFWNQMDSSSANLPVVKFEGSKPIQVGMGNSSELSFSFAKFAPRTAEFVIPSWYTEQEAPVDDTFKDPNAGLADKVQEMIDKNELSDDDIPF
Ga0208157_100025311	F006845	AGG	MKSYEKLMDLNSYLLQEGFEEFCRRAYERISLACEILSIVNDETYEDFRERNYATLESDYLNSIEKTIH
Ga0208157_100025321	F034894	AGGA	MNVRFNLLGGGELNIPPRAISGFYKDQFTSEVIVEVGEDEYKVRDSLDEVKYILGLAR
Ga0208157_100025323	F007417	GGA	MGRGKFIMTRYTLQVQLPSLGWVVAIKTSDLFYMASKRARLIKEGHKVKLTKESK
Ga0208157_100025325	F001942	N/A	MPRKTSDQHQANSRLGALGESLVQTFLLEYADFCFPTQEKHPADLIVEFGNAKYTVQVKSRRATKEKKFVFAAENSRTMSDTYKNYTCDILAFVFFYDDQKRIMFKSNTSSQNYFTFDKKVITDTMELDSLQESLDTLSAVPVLNPII
Ga0208157_100025329	F008595	AGGAG	MSKEENKMENQEPVIITFNGTEYRAADLNEEQMALAAKLNIAGKKLARLQEAYDDYVITDEYKNLCIQSFDRAINAEEVAEVVEEE
Ga0208157_100025340	F002716	AGGAG	MSQFRLETELDMAGYLDINFGHGVSAVYTNSGNSTTINVILNNEYVEQEEGIGVEALKPIAYCRTIDVPNIAFGNTLDISAIKDTNGNILKAAQNYTVVNIQSDRTGFSALMLEEI
Ga0208157_100025341	F001582	GAG	MPLESALDFNAYVDTTTGHGVTATFFEVQSSLWDLRQGLIDTWFDIDSGDAYSVNIIIDQEYFNIEGGTVPVAGYQPRAILKSSDVPYISQEDRLVVDAITTDKGNVLKPKTTFLVKTVEPDNTGLVSVVLEEQ
Ga0208157_10002538	F002221	AGGA	MKTYLNESLKDKLKELRLYEVDTRIKWGNRKRIFKMVGVQFEIKFCRAEQMLKDSLQKDAPRKQVQMVEMMLRAYEQLNIKCESSGYIQIQPNAKCFNFDNKTALVCDTDSEKPVLEKIHKDEKDIMIFSIEELFRCIPKDFIRAKELLSKLDKSVNIKRVDYV