Scaffold Ga0208157_1000147

Overview

Basic Information

• Taxon OID: 3300025086
• Scaffold ID: Ga0208157_1000147
• Source Dataset Name: Marine viral communities from the Subarctic Pacific Ocean - 5_ETSP_OMZ_AT15132 metaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 45318
• Total Scaffold Genes: 71
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 53 (74.65%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): -12.999
  • Long. (^o): -80.801
  • Depth (m): 90

Associated Families

Family	Category	Number of Sequences	3D Structure?
F019558	Metagenome / Metatranscriptome	229	Y
F034349	Metagenome	175	Y
F066156	Metagenome	127	Y
F067206	Metagenome	126	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208157_100014722	F034349	AGGA	MANLQIQNITTLEDQGKALAEEWETITKGDKRRFNKSTKADGFDTRLGKLMVELRAEVNGGKITSQRLREVHLHLVDKRRRSEAEWFINNEVDARKFVAKSKKGFTSLTALQRAMKPSKPKAEDTEGTNSEAEVKSNVGPTEKPTVTVTKELVFDKLVAVCKANNIDLLDIAEMLMEVDTVSEAEAEETKVAA
Ga0208157_100014729	F067206	N/A	MDLNMDNLIEIDFNYIYVTHNGVKVSIAQHRDPDPLATKFQEVGIGEPNAFMPIIRYGSTLTELIDALQEAQSRIDYKVYKGDLWHDECETEI
Ga0208157_100014736	F019558	GAGG	MAVMAYEVTLEIDGTNSIVTLDDTYPAVRDWKTATEFAIHLALHDHPDAIVDFVDCAEYEHEEYTKWGYIHEAPLTLQ
Ga0208157_10001479	F066156	N/A	MWVLVWLQLTSGMPLDYFQLGVYDTRKMCELQKEKAQVMIIHNGISVQCIGIDNGETE