Scaffold Ga0208157

Basic Information
Taxon OID	3300025086 Open in IMG/M
Scaffold ID	Ga0208157_1000090 Open in IMG/M
Source Dataset Name	Marine viral communities from the Subarctic Pacific Ocean - 5_ETSP_OMZ_AT15132 metaG (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300025086 Open in IMG/M

Scaffold ID

Ga0208157_1000090 Open in IMG/M

Source Dataset Name

Marine viral communities from the Subarctic Pacific Ocean - 5_ETSP_OMZ_AT15132 metaG (SPAdes)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	60031
Total Scaffold Genes	82 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	45 (54.88%)
Novel Protein Genes	10 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	7 (70.00%)
Associated Families	10

Scaffold Components

Scaffold Length (bps)

60031

Total Scaffold Genes

82 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

45 (54.88%)

Novel Protein Genes

10 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

7 (70.00%)

Associated Families

Taxonomy
All Organisms → Viruses	(Source: IMG/M)

Taxonomy

All Organisms → Viruses

(Source: IMG/M)

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location Name	Pacific Ocean
Coordinates	Lat. (^o)	-12.999	Long. (^o)	-80.801	Alt. (m)	Depth (m)	90
Location on Map

Zoom:	Powered by OpenStreetMap^©

Source Dataset Sampling Location

Location Name

Pacific Ocean

Coordinates

Lat. (^o)

-12.999

Long. (^o)

-80.801

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001419	Metagenome / Metatranscriptome	698	Y
F002883	Metagenome / Metatranscriptome	523	Y
F006348	Metagenome / Metatranscriptome	375	Y
F008624	Metagenome / Metatranscriptome	330	Y
F011578	Metagenome	289	N
F012353	Metagenome / Metatranscriptome	281	N
F021120	Metagenome / Metatranscriptome	220	N
F025518	Metagenome / Metatranscriptome	201	Y
F028529	Metagenome / Metatranscriptome	191	N
F034958	Metagenome / Metatranscriptome	173	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208157_100009014	F012353	N/A	MKLMLYTTGEWKVDPNKDITFPLVRWLFKLFPILDGSDIEINQVDLGDEFAFGFCQQDDGEFLIHVHNRMDLREYVKTLIHEITHVRQTLDGITDSNAREDEAYHLEEELSKAFWDRYKSGTPGVES
Ga0208157_100009015	F034958	AGGA	MKKSKLEQTIDNLEICIDFLGLDNERTGEMLAATEELGLNVEYFCHEFMETSSIELHNPDYLNIAEFNAMFWEF
Ga0208157_100009018	F021120	AGGAG	MKIFTIQFTEHELTELENVLDQHVYAEVIETKGGEGIIGTIHNRILDVHYQNSDGLVPVQEATHRHFRKDLDLL
Ga0208157_100009020	F028529	AGGAG	MRLSKFLTENTDTKTVTLTLTFDERSELLRHLEVYDEHIDQLHPLVESVQDKLLGID
Ga0208157_100009027	F011578	AGG	MITAFITGVVVAIPTSLITMKLLNSSLFISNTELREANAKISLIINNLDDFREERLAEKMERMGITDKLDPRLSIK
Ga0208157_100009029	F025518	N/A	MQLKKKSVTLYTINPMSDKLVHKTKTSLREEAKVFLPTVKEFYPHLDDMLTDRIAKYCVIYSKGTDKASIRQAINDFEEVFDTELMQ
Ga0208157_100009039	F008624	N/A	MNPQSHRSTEELKAIVKALSSLRLLNTAEEDQRLFDCENELRKRKKEQDFIDAHFQVVVY
Ga0208157_100009040	F002883	AGG	MSTLHHEDMLLEIFDEVQENFPYLDEDKQIEIANNRFQELCQ
Ga0208157_100009041	F001419	AGGAG	MMYEFDGYDEILKCYEGETDQHASTSFEVGLMNELYYQLFREDF
Ga0208157_100009045	F006348	GGAGG	MNKFYIVEKIGFDTKFKTDDEIKDLEWKSDNGLGVWSAEGKTEDERISKLFDKVQDYMGVYLTELSYCNNRPHPLTAFM

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0208157_1000090

Overview

Ecosystem & Geography

Associated Families

Sequences