Scaffold Ga0208157_1000064

Overview

Basic Information

• Taxon OID: 3300025086
• Scaffold ID: Ga0208157_1000064
• Source Dataset Name: Marine viral communities from the Subarctic Pacific Ocean - 5_ETSP_OMZ_AT15132 metaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 81217
• Total Scaffold Genes: 121
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 20 (16.53%)
• Novel Protein Genes: 10
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (10.00%)
• Associated Families: 10

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): -12.999
  • Long. (^o): -80.801
  • Depth (m): 90

Associated Families

Family	Category	Number of Sequences	3D Structure?
F007611	Metagenome / Metatranscriptome	348	Y
F008022	Metagenome	340	Y
F009491	Metagenome / Metatranscriptome	317	Y
F022645	Metagenome	213	Y
F030052	Metagenome	186	Y
F057677	Metagenome / Metatranscriptome	136	Y
F059877	Metagenome	133	N
F070651	Metagenome / Metatranscriptome	123	N
F072842	Metagenome	121	Y
F092742	Metagenome / Metatranscriptome	107	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0208157_1000064100	F030052	N/A	MKNKYIKKIIELEELLKHHDWYYAMSDDHRYYSSGRKSFEKIWKLMDELKNNNYGVMAENLYDTYKK
Ga0208157_1000064104	F009491	N/A	MSNTIKNSQIKILKINNKTYLPYQLHQLPKFFDKYTTDFFNLKGYCYINLEDHSDNFNLQNFKNRLTFHKNLSGSLSR
Ga0208157_1000064114	F057677	N/A	MAYNENYLFFNEGTDAADATGDGQMFSSSSFLGANVTGSAAVTLHFASRNGAATDDTVVITMGTSNVKLLMQELAAVLSNPRGGLFFQTDFVGEAKNFLSGTNTLVITTAS
Ga0208157_100006412	F007611	AGG	MKKKTITVLDYSSARVFQYSVKINVHSEEFIQFKGHRLKDVEWMEHQISSIITK
Ga0208157_100006418	F072842	N/A	MVNGGSTPLYTTKILTFKKIEIMSRLHREILKNQLFNHDYSNTPVNKMILVELEYSQITVQSEGPQGFTHYKTSGGSLENLIEQMNQRVEKSPDYDLIIVDKSDKIW
Ga0208157_100006432	F092742	N/A	MKGENYLYLNAHTAEPAADDKAMMIPASTVLGIAIGAIAGTVDVDAIYLTCEGFVGDGNSRGSVVLAVTEGKLVEAMDDLVTAINANPGDGFQVIADVANNVFCSEHITGCTVDSAV
Ga0208157_100006490	F008022	N/A	MTTTELQAKIEALQAALETKAQEQNAYRGQIDTLKKQLADLNKPKLTMKQFDELTTFVECGIEEFDFDDLDNYSIDYGIDYDNRITCESFCFDNVDELARVVCEKVYTMFGEANEDTNEENQD
Ga0208157_100006493	F022645	N/A	MKNTNEIEKQLQRKADKYLEQKAKEMFEIHREIAMYLGGSLPSYIDYITDFSDYSKDITANRGKYFTCSSPSSMEFKFQKDLEKNYKEKIVTKYTKELLTKLDIFE
Ga0208157_100006497	F059877	N/A	MKINNFIATAVAATLALTSCEKTDYDVQFDRDAHVKIMSENYVKTTAISSCTGLDTSWTVDFGVAMCINVANLPGIDDVRYDEYEFYAMLDGRKVKGFQNLKDQISDRTQGLIDGNINVQLSGHTDLAVYLLHENMYKAQFFVENGDGQLFELQLKELY
Ga0208157_100006499	F070651	N/A	MVLWRKTYMTLIKNNNMKITIQQTGKTYIAKDSEEVKVIHNHDSIIKIAGEYYKNVKTNEWISEDEYYDSLCLKFEEDESNKYY