Scaffold Ga0208157_1000039

Overview

Basic Information

• Taxon OID: 3300025086
• Scaffold ID: Ga0208157_1000039
• Source Dataset Name: Marine viral communities from the Subarctic Pacific Ocean - 5_ETSP_OMZ_AT15132 metaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 113632
• Total Scaffold Genes: 105
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 19 (18.10%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): -12.999
  • Long. (^o): -80.801
  • Depth (m): 90

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002047	Metagenome / Metatranscriptome	599	Y
F004866	Metagenome	420	Y
F006666	Metagenome / Metatranscriptome	367	Y
F059027	Metagenome / Metatranscriptome	134	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0208157_100003919	F059027	N/A	MGAPKQVYKLSQQFESPAFEGVTRAQTGNARLLHVNLVISWLRDLAGSDTYADETAAKAAGLEKGDLYLKDGDSSIHIVLT
Ga0208157_100003930	F006666	N/A	MKPKSHKVLKEGIAEEVGVHPSVVDDFITFYFAKVRSALSNLEYPRIHVDGLGTFYLRKSKLEKAIKKNKSILGNLAKRTYLGFAKSEDIQKNILQMTNGLNQIEEDIKNKKKFKSAK
Ga0208157_100003931	F004866	N/A	MALVNKVDLKLKVDIDTSIMYQILTYCFFNGILITNSDLKFLMYLSKNNKMELTKFCLLLVNNNIFKSPQSARNAITKAEKKNLLIKKGSNKKTISINPEINVQNSGLVLLDYKILGNETKES
Ga0208157_100003963	F002047	N/A	MWELFQKMLKNNLTPNQVITLFGMREGVSLPITTDDDKKALVDNNYIEHTDGVYKLTRHGKLIIINLDNYFIKAKKKTDIQLMGKNFLDKINQYREIFPAKKLPSGKLARNNVKALADAFRWFFETYDHKWEDVVKATKMYVNEYRNSDYMYMQTSQYFICKQDKHRVKHSTLADYCDMILEGINTEDEHFKENVV