Scaffold Ga0208792_1066158

Overview

Basic Information

• Taxon OID: 3300025085
• Scaffold ID: Ga0208792_1066158
• Source Dataset Name: Marine viral communities from the Subarctic Pacific Ocean - 14_ETSP_OMZ_AT15311 metaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 658
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → Viruses → environmental samples → uncultured marine virus (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): -14.51
  • Long. (^o): -76.2
  • Depth (m): 9

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002078	Metagenome / Metatranscriptome	596	Y
F048916	Metagenome	147	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208792_10661582	F002078	GGAG	MDIAAMFEGQGWFEIAGQVVLIFTAITGALPDKFVQKIPVLNTIWPIFNWLAGNVFNNINHPKGMAASKEVEKEIDEAKAKIRERTDMPDVLDGM
Ga0208792_10661583	F048916	GGAG	MKLKLRFGSVLICLMFLTGCSAGLLTELVAPVTNFGLGLYNADTYYSKECAWYEEIKLAPATKQWLTDSKPPAGVVKDLAKVARNNDI