Scaffold Ga0208792_1016308

Overview

Basic Information

• Taxon OID: 3300025085
• Scaffold ID: Ga0208792_1016308
• Source Dataset Name: Marine viral communities from the Subarctic Pacific Ocean - 14_ETSP_OMZ_AT15311 metaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1595
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (87.50%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): -14.51
  • Long. (^o): -76.2
  • Depth (m): 9

Associated Families

Family	Category	Number of Sequences	3D Structure?
F031261	Metagenome	183	Y
F032048	Metagenome / Metatranscriptome	181	Y
F035272	Metagenome / Metatranscriptome	172	N
F078570	Metagenome	116	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0208792_10163081	F031261	N/A	TKNYVMTVDKKSDNILEQLNKLQQVRQSVSLLNKHSTRKHYVKCQGRWGRKNPDYNRRTIPFCPLDKAVKWDVYIYQGGR
Ga0208792_10163083	F035272	AGGAGG	MMTYKQWCDFRELLNILHIEVESKICDVKVEEAFDDVWDMVDEIDTTQEIT
Ga0208792_10163086	F078570	AGGAGG	MSDEHIVLEGKVMWAFLNKKDIWGSYGLCLIPNKKSLEIVKENKFYNYKEDKGWISLRHRESNFNIYDKQNNLIINSIYPLANNSHVKVRCESFIWEMNNEKCLHLKDIKIIKNIKIKSDINWEVGYEQHN
Ga0208792_10163087	F032048	GGAGG	MSNTINEQTLEQIFDEVLEQDSKGLLEDDIDEICYLYELHADDDRDEILSFIAESIFYNQHN