NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208792_1006860

Scaffold Ga0208792_1006860


Overview

Basic Information
Taxon OID3300025085 Open in IMG/M
Scaffold IDGa0208792_1006860 Open in IMG/M
Source Dataset NameMarine viral communities from the Subarctic Pacific Ocean - 14_ETSP_OMZ_AT15311 metaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2766
Total Scaffold Genes12 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)11 (91.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)-14.51Long. (o)-76.2Alt. (m)Depth (m)9
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F035971Metagenome / Metatranscriptome171N
F071780Metagenome / Metatranscriptome122Y

Sequences

Protein IDFamilyRBSSequence
Ga0208792_10068601F035971AGGAGMGNLTWNEVAQIEIDKRYMDMYGLSQLDMEDMLHEEMPCMLAMSILSDAQHVMSYDQEQARQFINRAKYVIRHIKSNVGLETTLTTNTLTNQ
Ga0208792_10068607F071780GGAGMTDNYDSGFDLVLSDYERGYLTAYYDTVVFDAMADCCDEDWFGVQIGDRMFDLNAWTDEDTGSFVCTVYECDWDGTQNNWKTNCRHSWTLTEENDDANT

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