Scaffold Ga0208792_1000667

Overview

Basic Information

• Taxon OID: 3300025085
• Scaffold ID: Ga0208792_1000667
• Source Dataset Name: Marine viral communities from the Subarctic Pacific Ocean - 14_ETSP_OMZ_AT15311 metaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 12395
• Total Scaffold Genes: 17
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (47.06%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): -14.51
  • Long. (^o): -76.2
  • Depth (m): 9

Associated Families

Family	Category	Number of Sequences	3D Structure?
F015345	Metagenome / Metatranscriptome	255	Y
F023365	Metagenome	210	Y
F085808	Metagenome	111	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208792_10006675	F015345	N/A	LTTVDLFAIKERIVDILKSDTTNLWDSTPNDKTKFRKIEAGSPSPKAIQEPPLPRLWVTSDDVVANVSHVAVIENNVHLGEEYDIRIKILFVVEAKDGQKTEENIDDFTKSIIDKLETNYDLRDGAESTRLAEASQVTQIMDLPTMFRGDRVKGRVIKFKVIVRT
Ga0208792_10006676	F023365	N/A	MANLGEITEIVNASELTLEVGSDNYILLTNLSLHIGRPEDRVATTDGGALFTYGKGDNYFTATLLVSTPELTTLNTLGQIDSDGDMTSTAWKIIAKNVSGSTKTFAATGILREYDVSKPSEGKVSIDIFVRITGDTISIS
Ga0208792_10006678	F085808	AGGAG	LSNAAIWQVQASGNGTESGAGDSNTIDFNATSKVPSAGAYISDITVNFRRAVPENEAVATDNNELQDMGIDGLDITLEGVIGNADNDTTANSVNKLSKFIQDGNTITGFTKGRYGLRLDNAPQWNVVPTSTYGYHIRDVKLNYIGENKDLVHFVILMALGGDIASAI