Scaffold Ga0208298_1055275

Overview

Basic Information

• Taxon OID: 3300025084
• Scaffold ID: Ga0208298_1055275
• Source Dataset Name: Marine viral communities from the Subarctic Pacific Ocean - 14B_ETSP_OMZ_AT15311_CsCl metaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 769
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): -14.51
  • Long. (^o): -76.2
  • Depth (m): 9

Associated Families

Family	Category	Number of Sequences	3D Structure?
F010947	Metagenome	297	Y
F040339	Metagenome	162	Y
F054357	Metagenome	140	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208298_10552751	F040339	AGGAG	MSIRDNLDRETYGDLMYRLGQMDAILQDLKSTISRFHEESRRIREAQPPEIVMALD
Ga0208298_10552752	F010947	GAGG	MRKDIKKMINPALVEKWNKNKDGKLNGIVFNKGDLVSRTDCDGESLGIVLEQDGIMASVQWTKQPDDFNLQRRVFISSLKLISGVNK
Ga0208298_10552753	F054357	N/A	MANVAYRRGDIIMHPMSGKAWLHIAEVKFSGHRGYVYECINQKTGKKVTLSAENESIKLVSKTRKR