Scaffold Ga0208298_1023998

Overview

Basic Information

• Taxon OID: 3300025084
• Scaffold ID: Ga0208298_1023998
• Source Dataset Name: Marine viral communities from the Subarctic Pacific Ocean - 14B_ETSP_OMZ_AT15311_CsCl metaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1323
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (40.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → unclassified viruses → unclassified DNA viruses → unclassified dsDNA viruses → Prokaryotic dsDNA virus sp. (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): -14.51
  • Long. (^o): -76.2
  • Depth (m): 9

Associated Families

Family	Category	Number of Sequences	3D Structure?
F009521	Metagenome / Metatranscriptome	316	Y
F019728	Metagenome	228	Y
F091841	Metagenome	107	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208298_10239982	F019728	AGG	MLNKSKELNNMITKQELKKNGWTIVPDGVWFGVDYAESHKVNVLDTLTDLLDLDTEAEGYNFVVCAYKKEQD
Ga0208298_10239983	F091841	N/A	MKQEKKYKIIDWAYNRMFPNKTFKTFDHGIEFLYKRFDEDELQDIFVVPCDTRCYANGYWSSSN
Ga0208298_10239985	F009521	N/A	KYTITINNGTLKGFIAFRGSCLITMQDKYNRLTNQGHKLKLIKG