Scaffold Ga0208298_1017863

Overview

Basic Information

• Taxon OID: 3300025084
• Scaffold ID: Ga0208298_1017863
• Source Dataset Name: Marine viral communities from the Subarctic Pacific Ocean - 14B_ETSP_OMZ_AT15311_CsCl metaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1613
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): -14.51
  • Long. (^o): -76.2
  • Depth (m): 9

Associated Families

Family	Category	Number of Sequences	3D Structure?
F013088	Metagenome / Metatranscriptome	274	Y
F018155	Metagenome / Metatranscriptome	236	Y
F058166	Metagenome / Metatranscriptome	135	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0208298_10178631	F058166	AGGAG	MDILGGMSNSNNESQQVYLAFKTAQQKFFLNGDTEVDFKFLQLDPATFKSGWGRYAGEYQYQWDAKFGVAEPKPADDWKRAFSCCVMPHGHDHALIWSRFTFAESSAFNKILSSFWNQMDANSDSLPVVEYKGSKEIQVGMGRSSELSFEFTKFAPRFDNFVIPPFYDNDGDANADDGFKSPND
Ga0208298_10178633	F018155	AGGAG	MGQNSAAVEKRRKELAQEKLDKQIKVYYFQKGAGKHYREVTYMSGKVVRTDYDA
Ga0208298_10178634	F013088	GGAG	MDEKIKKALWISDDLHKEVKIFAIKNNMNIETASQMVLKLGMVSYKENKKNGSK