NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208298_1016672

Scaffold Ga0208298_1016672


Overview

Basic Information
Taxon OID3300025084 Open in IMG/M
Scaffold IDGa0208298_1016672 Open in IMG/M
Source Dataset NameMarine viral communities from the Subarctic Pacific Ocean - 14B_ETSP_OMZ_AT15311_CsCl metaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1688
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (40.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)-14.51Long. (o)-76.2Alt. (m)Depth (m)9
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F014328Metagenome264Y
F105912Metagenome100N

Sequences

Protein IDFamilyRBSSequence
Ga0208298_10166722F014328GAGGMTDTDMFVDYQGKIKLLKKKLRMSKNISNDLEVIIESQKKEIDTLKQIIAIQEIQMDTPTKTRTNKVYQLKSILKKCRERGKYDLALKLINKYQINKETLTERYYD
Ga0208298_10166725F105912N/AMRFAKYFDKDLYSRWHRLWEGIAMADVDSVEICRNKGCWKPLAIIEHLYDTGSDKKKYTNIVEQIGKGLNIPVYLVYYKEVGEDTLSFRVAQKYPI

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