Scaffold Ga0208298_1005955

Overview

Basic Information

• Taxon OID: 3300025084
• Scaffold ID: Ga0208298_1005955
• Source Dataset Name: Marine viral communities from the Subarctic Pacific Ocean - 14B_ETSP_OMZ_AT15311_CsCl metaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3361
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): -14.51
  • Long. (^o): -76.2
  • Depth (m): 9

Associated Families

Family	Category	Number of Sequences	3D Structure?
F013135	Metagenome	274	Y
F073440	Metagenome	120	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0208298_10059554	F073440	GGA	MPKIPTFESTARPTTDVGAVTTGIQVSPTSTIAAKLLPASDQLANYAIKKRDNEEKLIAKKAILELKSESDKIIESQKDNISEDESINNWKQTFTPLIKQKTSSITNRRVKKLVEDGINLENSESIYHLKQNSFKAYEKESAKIYNDDINADVAKFKSETNPTLKDKYRDQLYLKAELYNEEHMLGSNDLKKRIEAIDSVLLLTDADSFIGTPDAVEKIKKIDKDINGTKFLSDEIFNNSIYNSYKQKIESVAVKGDPNADYEEAERLLNELENFERYNGSKTVSGKREAEFATLKQKILTESIGHDTFVRKIEQGNKFFEYQTEQKKLLESSFFNSFIPTLNKSIDKERAVEAGLEYDERIDLYVQLNQNATYAEQQQYARQLRIDLQDKYEKVATEQITSFNLEENKFNVIREADKIIEAKNNYIADPKAKNILITMSRLNGYVDEEGNPEVIKFYNDYIKILKSRQEG
Ga0208298_10059555	F013135	AGAAGG	MADVQLSEEAIEFEKQFEESTKKVEPVNSGLITNPDEEDFNFWNKAGSLTLSAGQGVVNAVEEQGDFLDENIVSLGGLEFGDEDGKFTFKDLIPKYVSPKKWKEGGYSQKRNLPVFHKPEGIGENLTEGAARFVTGFIGPSKILKGVGLGGNIVKTGLRGMTAGAVTDLTVFDPNEGRLS