Scaffold Ga0208298_1005132

Overview

Basic Information

• Taxon OID: 3300025084
• Scaffold ID: Ga0208298_1005132
• Source Dataset Name: Marine viral communities from the Subarctic Pacific Ocean - 14B_ETSP_OMZ_AT15311_CsCl metaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3733
• Total Scaffold Genes: 16
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 13 (81.25%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): -14.51
  • Long. (^o): -76.2
  • Depth (m): 9

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005547	Metagenome	397	Y
F070089	Metagenome	123	Y
F079212	Metagenome	116	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208298_100513212	F070089	GGA	MKVGDLVKFDNALARDVFETDPSREHGLVVQISKTGHDTVSAQVIFNDGELWWVDSGRLEVISEGR
Ga0208298_100513214	F079212	GAGG	MKEYEKQLIDRCIESHYNMIKHHRRAIIELCRRKSIDERCMECFDFEIINESGRSGKSEERS
Ga0208298_10051327	F005547	AGG	MKVWVMQGSYEGETFSSVHFTQKGCALACIADITEFHGIDDDETALSVMNNTYHGETEEYTEPIEWDQEKLKEMSSKDLWKIFADWCEMSWDRMADRSYRIDAQSMEMQA