Scaffold Ga0208298_1002912

Overview

Basic Information

• Taxon OID: 3300025084
• Scaffold ID: Ga0208298_1002912
• Source Dataset Name: Marine viral communities from the Subarctic Pacific Ocean - 14B_ETSP_OMZ_AT15311_CsCl metaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5469
• Total Scaffold Genes: 15
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Archaea → unclassified Archaea → archaeon (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): -14.51
  • Long. (^o): -76.2
  • Depth (m): 9

Associated Families

Family	Category	Number of Sequences	3D Structure?
F027054	Metagenome / Metatranscriptome	196	N
F034391	Metagenome / Metatranscriptome	175	N
F049006	Metagenome / Metatranscriptome	147	N
F054012	Metagenome	140	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0208298_100291212	F027054	N/A	MAKQKKETSRHWTVELNVGSKRNMGKLKHSKSSGYRYAYHDLNHVREKVKNRFDGGSGNIIKSMFEFTGEYNDEVEKSFYIAFSFYGNIETFKEEDGLEGEYMAFNDRKILEDKLLILCMELEQECIAYNIKEWTSSTFYPTGKQDLIYHPNYDGEQMIFEDEYFMTFGYHKLSSFEQLHKA
Ga0208298_100291214	F034391	N/A	MRTKFASQIDNKLLEGVLDYMANELKGEFGFETLDAEDKLDVIALFVDNPTSYETPYLHSIETTDTEVVSSRKKSNVEILQDLSNYTRYDG
Ga0208298_10029123	F054012	N/A	MQTIKYNKSKQTYTIKTLSKNKQIIQLEILTKLNNKTQKLLNLTNKFHTTSFLPNFVKINNLYYKQEFDFEYAN
Ga0208298_10029129	F049006	N/A	MTKPEFIDVCTRHGVDQWVVMDDLLLNGKQHPHDLTVNDLNEFMWSTY