Scaffold Ga0208298_1002523

Overview

Basic Information

• Taxon OID: 3300025084
• Scaffold ID: Ga0208298_1002523
• Source Dataset Name: Marine viral communities from the Subarctic Pacific Ocean - 14B_ETSP_OMZ_AT15311_CsCl metaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 6060
• Total Scaffold Genes: 14
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 10 (71.43%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): -14.51
  • Long. (^o): -76.2
  • Depth (m): 9

Associated Families

Family	Category	Number of Sequences	3D Structure?
F043681	Metagenome / Metatranscriptome	156	Y
F044800	Metagenome / Metatranscriptome	154	Y
F054892	Metagenome / Metatranscriptome	139	N
F101195	Metagenome / Metatranscriptome	102	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208298_100252311	F054892	GGAG	MPEEVKQEEMKIVLEDGKEVSFSDLSDEQKILVNHLRDLDMKMGRLNFEAQQLQAAKNAFSKELNDSFEEVEEDA
Ga0208298_10025235	F101195	AGGAG	MAKKYKLKDKSIPRKPSFLKLGKNNWYKLNTGKSVELDKVSELAKDYLEEVKVKIKEVKDNGK
Ga0208298_10025236	F043681	AGGA	MAISFNNITYDKIMIPLRDKLRTEFAGAMPIYFDNTHRQVGNKSLRIYPVAQTLQDKRTRSYINLYEIEMDYVLNTNRSNEKALDEMYKDVTRIETVLFNNSNGGDIPYFYAGMPTIDHNIDTDIPNALVSKISVPVLYEEVHERFVRFITSNDKFFVTSDGSFYIVRS
Ga0208298_10025237	F044800	AGG	MATASTNAWKVNVEETIQTGIRNEFFSSLPVFRSRDFQHRGNQFAILKGNSSEPQNTMYAVTPDTYNLSFEFYMLDRKRNDTTVKRFFNQVSRIEETFYSLLDIDPLFNVIINAIDYSDDEEFNGYRKANFDMVVRNVR